miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23947 3' -56.3 NC_005262.1 + 17125 0.66 0.645952
Target:  5'- cAUCGGCGGGCGUcgGUGCcGGCGCc---- -3'
miRNA:   3'- -UAGUCGCUCGCG--UACG-UCGUGcucau -5'
23947 3' -56.3 NC_005262.1 + 41563 0.66 0.645952
Target:  5'- -cCGGCcGGCGUggGCGGCGCGGccGUGa -3'
miRNA:   3'- uaGUCGcUCGCGuaCGUCGUGCU--CAU- -5'
23947 3' -56.3 NC_005262.1 + 15985 0.66 0.645952
Target:  5'- gAUCGaCGAGaucgGCGUGCAGCGCGGc-- -3'
miRNA:   3'- -UAGUcGCUCg---CGUACGUCGUGCUcau -5'
23947 3' -56.3 NC_005262.1 + 21504 0.66 0.645952
Target:  5'- -cCAGUG-GCGCAccgAGCGCGAGUAc -3'
miRNA:   3'- uaGUCGCuCGCGUacgUCGUGCUCAU- -5'
23947 3' -56.3 NC_005262.1 + 2153 0.66 0.645952
Target:  5'- cAUCGGUcAGCGCAU-CAGCGCGGc-- -3'
miRNA:   3'- -UAGUCGcUCGCGUAcGUCGUGCUcau -5'
23947 3' -56.3 NC_005262.1 + 10462 0.66 0.634813
Target:  5'- gGUCGGCGAG-GUA-GCGGCGCGcgcGGUc -3'
miRNA:   3'- -UAGUCGCUCgCGUaCGUCGUGC---UCAu -5'
23947 3' -56.3 NC_005262.1 + 52338 0.66 0.634813
Target:  5'- ---cGCGAGCGCGguagGCAcgauGCGCGGGc- -3'
miRNA:   3'- uaguCGCUCGCGUa---CGU----CGUGCUCau -5'
23947 3' -56.3 NC_005262.1 + 56626 0.66 0.623672
Target:  5'- aAUUAcGCGguAGCgGCAUGCGGC-CGGGUGu -3'
miRNA:   3'- -UAGU-CGC--UCG-CGUACGUCGuGCUCAU- -5'
23947 3' -56.3 NC_005262.1 + 56079 0.66 0.623672
Target:  5'- cUgAGCGgucAGCGCAagaUGCAGCuCGAGg- -3'
miRNA:   3'- uAgUCGC---UCGCGU---ACGUCGuGCUCau -5'
23947 3' -56.3 NC_005262.1 + 50411 0.66 0.620331
Target:  5'- gAUCAGCGccgcggagcgcgagGGcCGCGUGCAcgucgucgugccGCGCGAGg- -3'
miRNA:   3'- -UAGUCGC--------------UC-GCGUACGU------------CGUGCUCau -5'
23947 3' -56.3 NC_005262.1 + 56744 0.66 0.612539
Target:  5'- -aCAGCGAGCGUgaauggcucgcgAUGC-GCGCGAa-- -3'
miRNA:   3'- uaGUCGCUCGCG------------UACGuCGUGCUcau -5'
23947 3' -56.3 NC_005262.1 + 40466 0.66 0.612539
Target:  5'- --uGGuCGAGCGCGUGCucguGCGCGGc-- -3'
miRNA:   3'- uagUC-GCUCGCGUACGu---CGUGCUcau -5'
23947 3' -56.3 NC_005262.1 + 48472 0.66 0.612539
Target:  5'- gAUC-GCGAGcCGCGUG-GGCACGGGc- -3'
miRNA:   3'- -UAGuCGCUC-GCGUACgUCGUGCUCau -5'
23947 3' -56.3 NC_005262.1 + 18634 0.66 0.601423
Target:  5'- gAUC-GCGucCGCAcGCAGCGCGAGc- -3'
miRNA:   3'- -UAGuCGCucGCGUaCGUCGUGCUCau -5'
23947 3' -56.3 NC_005262.1 + 33667 0.66 0.601423
Target:  5'- uUCGGCGAccaGCA-GCGGCACGAucGUGg -3'
miRNA:   3'- uAGUCGCUcg-CGUaCGUCGUGCU--CAU- -5'
23947 3' -56.3 NC_005262.1 + 40661 0.66 0.590335
Target:  5'- ---uGCGaAGCGCgGUGCGGCgaACGGGUGg -3'
miRNA:   3'- uaguCGC-UCGCG-UACGUCG--UGCUCAU- -5'
23947 3' -56.3 NC_005262.1 + 9365 0.66 0.590335
Target:  5'- gGUCGGCGcGCGCG-GCGGCcugcgccuccGCGAGc- -3'
miRNA:   3'- -UAGUCGCuCGCGUaCGUCG----------UGCUCau -5'
23947 3' -56.3 NC_005262.1 + 53114 0.67 0.578179
Target:  5'- cGUCGGCGAcuucacgaaaaccGCG-AUGCcGCGCGAGUu -3'
miRNA:   3'- -UAGUCGCU-------------CGCgUACGuCGUGCUCAu -5'
23947 3' -56.3 NC_005262.1 + 62317 0.67 0.568274
Target:  5'- -gCAGCGgcAGCGCcgGCAG-ACGAGc- -3'
miRNA:   3'- uaGUCGC--UCGCGuaCGUCgUGCUCau -5'
23947 3' -56.3 NC_005262.1 + 47854 0.67 0.568274
Target:  5'- --aAGcCGAGCGUGUGCAGCACu---- -3'
miRNA:   3'- uagUC-GCUCGCGUACGUCGUGcucau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.