miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23947 5' -62.3 NC_005262.1 + 16974 0.66 0.403903
Target:  5'- --gGGCACcgauauugcccugcuGCCGCCGgCCgagCGCgCGCu -3'
miRNA:   3'- uagUCGUG---------------CGGCGGCgGGaa-GCG-GCG- -5'
23947 5' -62.3 NC_005262.1 + 20434 0.66 0.400396
Target:  5'- --aAG-AUGCUGUCGUugugcgCCUUCGCCGCg -3'
miRNA:   3'- uagUCgUGCGGCGGCG------GGAAGCGGCG- -5'
23947 5' -62.3 NC_005262.1 + 18302 0.66 0.400396
Target:  5'- --aGGCGCGCCGgUuCgCUUCGCgGCg -3'
miRNA:   3'- uagUCGUGCGGCgGcGgGAAGCGgCG- -5'
23947 5' -62.3 NC_005262.1 + 50328 0.66 0.400396
Target:  5'- -gCAGCGCccGCCGCgcaggacgaagCGCCCgcgaCGaCCGCg -3'
miRNA:   3'- uaGUCGUG--CGGCG-----------GCGGGaa--GC-GGCG- -5'
23947 5' -62.3 NC_005262.1 + 37740 0.66 0.400396
Target:  5'- -aCGGCuugauGCGCCcCUGCUUgcgCGCCGCg -3'
miRNA:   3'- uaGUCG-----UGCGGcGGCGGGaa-GCGGCG- -5'
23947 5' -62.3 NC_005262.1 + 42430 0.66 0.400396
Target:  5'- gAUCuucGUGCGCuCGCUGCgcgcggCCUUgGCCGCc -3'
miRNA:   3'- -UAGu--CGUGCG-GCGGCG------GGAAgCGGCG- -5'
23947 5' -62.3 NC_005262.1 + 61035 0.66 0.400396
Target:  5'- -gCGGCAC-CCGCCGCCg--UGCUGa -3'
miRNA:   3'- uaGUCGUGcGGCGGCGGgaaGCGGCg -5'
23947 5' -62.3 NC_005262.1 + 30636 0.66 0.400396
Target:  5'- -cCGGCaucucgacgACGgUGCCGCCCUUaCGaCGCa -3'
miRNA:   3'- uaGUCG---------UGCgGCGGCGGGAA-GCgGCG- -5'
23947 5' -62.3 NC_005262.1 + 36474 0.66 0.395174
Target:  5'- gGUCgAGCAgguggucguggaugaUGCUGCCGaUCUUgcUCGCCGCg -3'
miRNA:   3'- -UAG-UCGU---------------GCGGCGGC-GGGA--AGCGGCG- -5'
23947 5' -62.3 NC_005262.1 + 6555 0.66 0.391716
Target:  5'- uUCGGCGUGuuGCCGCCgacgagCGgCGCg -3'
miRNA:   3'- uAGUCGUGCggCGGCGGgaa---GCgGCG- -5'
23947 5' -62.3 NC_005262.1 + 31622 0.66 0.391716
Target:  5'- uUCuGCcgcCGCCGCCGCCUUcuggaagucgaUCcacguGCCGCc -3'
miRNA:   3'- uAGuCGu--GCGGCGGCGGGA-----------AG-----CGGCG- -5'
23947 5' -62.3 NC_005262.1 + 48684 0.66 0.391716
Target:  5'- -cCAGCGCguuccaGCCGgaCGCCg--CGCCGCa -3'
miRNA:   3'- uaGUCGUG------CGGCg-GCGGgaaGCGGCG- -5'
23947 5' -62.3 NC_005262.1 + 3295 0.66 0.389136
Target:  5'- -gCGGCcuGCGCCGCgcggcccggcgucuCGCCCUgaUCGCgcaGCg -3'
miRNA:   3'- uaGUCG--UGCGGCG--------------GCGGGA--AGCGg--CG- -5'
23947 5' -62.3 NC_005262.1 + 43912 0.66 0.38316
Target:  5'- cGUCAGCGCGgCGCCaaCCgcgGCCGa -3'
miRNA:   3'- -UAGUCGUGCgGCGGcgGGaagCGGCg -5'
23947 5' -62.3 NC_005262.1 + 41965 0.66 0.38316
Target:  5'- uUguGcCGCGCCuGuuGCCUgacacCGCCGCg -3'
miRNA:   3'- uAguC-GUGCGG-CggCGGGaa---GCGGCG- -5'
23947 5' -62.3 NC_005262.1 + 117 0.66 0.38316
Target:  5'- -aCGGauuGCGUCGUCGCCg-UCGCCGg -3'
miRNA:   3'- uaGUCg--UGCGGCGGCGGgaAGCGGCg -5'
23947 5' -62.3 NC_005262.1 + 54555 0.66 0.38316
Target:  5'- -cCAGCgACGUCGCCG-CgUUCGCgaGCg -3'
miRNA:   3'- uaGUCG-UGCGGCGGCgGgAAGCGg-CG- -5'
23947 5' -62.3 NC_005262.1 + 13526 0.66 0.38316
Target:  5'- cUCGGCcgGCGCgGgCgCGCCCU-CGuuGCg -3'
miRNA:   3'- uAGUCG--UGCGgC-G-GCGGGAaGCggCG- -5'
23947 5' -62.3 NC_005262.1 + 33648 0.66 0.38316
Target:  5'- cGUCGGCAU-CCGCCGgCgCUUCGgCGa -3'
miRNA:   3'- -UAGUCGUGcGGCGGCgG-GAAGCgGCg -5'
23947 5' -62.3 NC_005262.1 + 57245 0.66 0.38316
Target:  5'- cGUCGGCggcaacACGCCGaaGCCCgugauCCGCg -3'
miRNA:   3'- -UAGUCG------UGCGGCggCGGGaagc-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.