Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23949 | 3' | -53.1 | NC_005262.1 | + | 47834 | 0.66 | 0.868539 |
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Target: 5'- aCUGGU-UUGAUCGGCGCAcca-UUCg -3' miRNA: 3'- aGACCAuAGCUAGCCGCGUcaccAAG- -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 7120 | 0.66 | 0.851975 |
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Target: 5'- -aUGGUGUCGuaUGGUGCGGUauGGUg- -3' miRNA: 3'- agACCAUAGCuaGCCGCGUCA--CCAag -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 49136 | 0.67 | 0.796972 |
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Target: 5'- aUCUGGcgaaGGUCGGCaCGGUGGg-- -3' miRNA: 3'- -AGACCauagCUAGCCGcGUCACCaag -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 7650 | 0.68 | 0.733588 |
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Target: 5'- aUCUGGUucagcuugcuguUCGGgucgcUCGGCGCGGUcGGgUCg -3' miRNA: 3'- -AGACCAu-----------AGCU-----AGCCGCGUCA-CCaAG- -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 2909 | 0.7 | 0.6585 |
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Target: 5'- gCUGGUgagguucAUCuGGUCGGCGCAGUaGUg- -3' miRNA: 3'- aGACCA-------UAG-CUAGCCGCGUCAcCAag -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 24734 | 0.7 | 0.648541 |
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Target: 5'- gCUGGcgcgcgCGAUCGGCGUgcggccgaAGUGGaUUCa -3' miRNA: 3'- aGACCaua---GCUAGCCGCG--------UCACC-AAG- -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 13718 | 0.72 | 0.506758 |
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Target: 5'- --gGGU-UCGGUCGGCGCAGcGGccUUCg -3' miRNA: 3'- agaCCAuAGCUAGCCGCGUCaCC--AAG- -5' |
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| 23949 | 3' | -53.1 | NC_005262.1 | + | 15926 | 1.11 | 0.001423 |
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Target: 5'- cUCUGGUAUCGAUCGGCGCAGUGGUUCg -3' miRNA: 3'- -AGACCAUAGCUAGCCGCGUCACCAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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