miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23949 5' -51.5 NC_005262.1 + 61366 0.66 0.927504
Target:  5'- gCGAGUGGcagGCaGCCGAg-GAACUAGc -3'
miRNA:   3'- aGCUUACCa--CG-CGGCUagUUUGGUCa -5'
23949 5' -51.5 NC_005262.1 + 25393 0.66 0.927504
Target:  5'- cUGGAUGGUGuCGCC-AUCGGgaauCCAGc -3'
miRNA:   3'- aGCUUACCAC-GCGGcUAGUUu---GGUCa -5'
23949 5' -51.5 NC_005262.1 + 17049 0.66 0.927504
Target:  5'- aCGAccGGcgugGCGgCGAUCGAuCCGGUc -3'
miRNA:   3'- aGCUuaCCa---CGCgGCUAGUUuGGUCA- -5'
23949 5' -51.5 NC_005262.1 + 24834 0.66 0.927504
Target:  5'- gCGGccGGcgccGUGCCGAUCAcccugcGCCAGUg -3'
miRNA:   3'- aGCUuaCCa---CGCGGCUAGUu-----UGGUCA- -5'
23949 5' -51.5 NC_005262.1 + 5135 0.66 0.921561
Target:  5'- gCGAcgGGcgGCGCUGAUCcuGCuCGGc -3'
miRNA:   3'- aGCUuaCCa-CGCGGCUAGuuUG-GUCa -5'
23949 5' -51.5 NC_005262.1 + 30843 0.66 0.902017
Target:  5'- aUCGAAcGGUGguUGCCGGUCGGAgCGa- -3'
miRNA:   3'- -AGCUUaCCAC--GCGGCUAGUUUgGUca -5'
23949 5' -51.5 NC_005262.1 + 3820 0.66 0.902017
Target:  5'- aUCGggUGcaugcGCGCCuGAUCGAGCgGGc -3'
miRNA:   3'- -AGCuuACca---CGCGG-CUAGUUUGgUCa -5'
23949 5' -51.5 NC_005262.1 + 49843 0.66 0.894939
Target:  5'- gCGAAUGGcccgGUGCCGGcggCGGuACCGGa -3'
miRNA:   3'- aGCUUACCa---CGCGGCUa--GUU-UGGUCa -5'
23949 5' -51.5 NC_005262.1 + 2513 0.66 0.894939
Target:  5'- gCGAGgcUGGccGCGCCGAUCGAGUCuGUc -3'
miRNA:   3'- aGCUU--ACCa-CGCGGCUAGUUUGGuCA- -5'
23949 5' -51.5 NC_005262.1 + 3525 0.66 0.894939
Target:  5'- uUCGAGgucGGacauccacgaUGCGCCGGUCuuGCCGc- -3'
miRNA:   3'- -AGCUUa--CC----------ACGCGGCUAGuuUGGUca -5'
23949 5' -51.5 NC_005262.1 + 44042 0.67 0.879961
Target:  5'- -aGAAUGGUGCGCaauUCuGACCGa- -3'
miRNA:   3'- agCUUACCACGCGgcuAGuUUGGUca -5'
23949 5' -51.5 NC_005262.1 + 30891 0.68 0.83801
Target:  5'- cCGGAUGGUGaCGCCGcUCGcGCUcgAGg -3'
miRNA:   3'- aGCUUACCAC-GCGGCuAGUuUGG--UCa -5'
23949 5' -51.5 NC_005262.1 + 36642 0.68 0.83801
Target:  5'- gCGGccGGUGUGCCGGcacCAGuACCAGa -3'
miRNA:   3'- aGCUuaCCACGCGGCUa--GUU-UGGUCa -5'
23949 5' -51.5 NC_005262.1 + 14375 0.68 0.828911
Target:  5'- gCGAGUGcGcggucgcccaUGcCGCCGAaCAGACCAGUu -3'
miRNA:   3'- aGCUUAC-C----------AC-GCGGCUaGUUUGGUCA- -5'
23949 5' -51.5 NC_005262.1 + 58117 0.68 0.819596
Target:  5'- -gGAAUGG-GUGCCGAU-GGugCAGUa -3'
miRNA:   3'- agCUUACCaCGCGGCUAgUUugGUCA- -5'
23949 5' -51.5 NC_005262.1 + 38162 0.69 0.780401
Target:  5'- cCGuacUGGUGgaUGCCGGUCAGggcACCGGUa -3'
miRNA:   3'- aGCuu-ACCAC--GCGGCUAGUU---UGGUCA- -5'
23949 5' -51.5 NC_005262.1 + 62994 0.69 0.758755
Target:  5'- aUCGAcgacaacGUGacaGUGCuGCCGGUCAAGCCAc- -3'
miRNA:   3'- -AGCU-------UAC---CACG-CGGCUAGUUUGGUca -5'
23949 5' -51.5 NC_005262.1 + 21651 0.7 0.717067
Target:  5'- gCGAccGGgcccgGCGCCGcgUAGACCGGc -3'
miRNA:   3'- aGCUuaCCa----CGCGGCuaGUUUGGUCa -5'
23949 5' -51.5 NC_005262.1 + 40001 0.71 0.672938
Target:  5'- cUCGAucGUGGUGCGCUucgcaucgaaGGUCAgcGAUCAGg -3'
miRNA:   3'- -AGCU--UACCACGCGG----------CUAGU--UUGGUCa -5'
23949 5' -51.5 NC_005262.1 + 31179 0.71 0.650586
Target:  5'- aCGGcGUGGUGCGCUGcugggUAGGCCAGa -3'
miRNA:   3'- aGCU-UACCACGCGGCua---GUUUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.