miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 3' -53.2 NC_005262.1 + 49954 0.66 0.864445
Target:  5'- gCGugACGUUCgaGCCgaucgccgacgAGAcaGCGGCGCc -3'
miRNA:   3'- gGCugUGCAAGa-CGG-----------UCU--UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 2034 0.66 0.864445
Target:  5'- gUCGGCGCGUgcuacgagcUCUaccCCAGcauccACGACGCGg -3'
miRNA:   3'- -GGCUGUGCA---------AGAc--GGUCu----UGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 38967 0.66 0.864445
Target:  5'- aUCGGCACGgc--GCCGGccGCGAuCGCGa -3'
miRNA:   3'- -GGCUGUGCaagaCGGUCu-UGCU-GCGC- -5'
23950 3' -53.2 NC_005262.1 + 30433 0.67 0.856328
Target:  5'- cUCGACACGUUCgUGaaGGAGauCGcCGCGa -3'
miRNA:   3'- -GGCUGUGCAAG-ACggUCUU--GCuGCGC- -5'
23950 3' -53.2 NC_005262.1 + 62971 0.67 0.856328
Target:  5'- gCCGACACGcggcUCUaucagGCCGaauACGACGUGu -3'
miRNA:   3'- -GGCUGUGCa---AGA-----CGGUcu-UGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 522 0.67 0.847983
Target:  5'- gCCGGCcgucaagcagGCGgcggCUGCCAcGAUGGCGCc -3'
miRNA:   3'- -GGCUG----------UGCaa--GACGGUcUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 15274 0.67 0.847983
Target:  5'- uUCGACGCGgcauggaugCUGCCAGucguCGAuucgcCGCGc -3'
miRNA:   3'- -GGCUGUGCaa-------GACGGUCuu--GCU-----GCGC- -5'
23950 3' -53.2 NC_005262.1 + 43825 0.67 0.847983
Target:  5'- gCGACACGgcCgcggGCCGGccGCG-CGCGg -3'
miRNA:   3'- gGCUGUGCaaGa---CGGUCu-UGCuGCGC- -5'
23950 3' -53.2 NC_005262.1 + 32155 0.67 0.847983
Target:  5'- gCGGCACGUggaucgaCUuCCAGAagGCGGCgGCGg -3'
miRNA:   3'- gGCUGUGCAa------GAcGGUCU--UGCUG-CGC- -5'
23950 3' -53.2 NC_005262.1 + 41543 0.67 0.839416
Target:  5'- gCGACgGCGUgaugCgcagGCCGGccggcgugGGCGGCGCGg -3'
miRNA:   3'- gGCUG-UGCAa---Ga---CGGUC--------UUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 45746 0.67 0.839416
Target:  5'- uCCGACAuCGUUCccGCgAacGCGACGCc -3'
miRNA:   3'- -GGCUGU-GCAAGa-CGgUcuUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 8388 0.67 0.830638
Target:  5'- gCCGGCGCucgagCUGCUcGAuGCGGCGCu -3'
miRNA:   3'- -GGCUGUGcaa--GACGGuCU-UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 63693 0.67 0.830638
Target:  5'- gCCGGC-CGgugacaUGCgCAGAagcguGCGGCGCGg -3'
miRNA:   3'- -GGCUGuGCaag---ACG-GUCU-----UGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 33158 0.67 0.830638
Target:  5'- uCCGACGCGggCaccuUGCC-GAGCGuCgGCGg -3'
miRNA:   3'- -GGCUGUGCaaG----ACGGuCUUGCuG-CGC- -5'
23950 3' -53.2 NC_005262.1 + 16471 0.67 0.830638
Target:  5'- aUCG-CACGUaucccgCUGCCGGAcgagcuggGCGAgGCGc -3'
miRNA:   3'- -GGCuGUGCAa-----GACGGUCU--------UGCUgCGC- -5'
23950 3' -53.2 NC_005262.1 + 48242 0.67 0.825272
Target:  5'- cCCGACACGUacaaggCaaugauggggacguaUGCCGGGcagcGCGAUGCu -3'
miRNA:   3'- -GGCUGUGCAa-----G---------------ACGGUCU----UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 38428 0.67 0.821655
Target:  5'- gCCGGCGCGgUCgagaucacGCCGG-ACGACgGCa -3'
miRNA:   3'- -GGCUGUGCaAGa-------CGGUCuUGCUG-CGc -5'
23950 3' -53.2 NC_005262.1 + 21882 0.68 0.812479
Target:  5'- gCCGAC-CGcgCaGCCGGA-CGACGaCGa -3'
miRNA:   3'- -GGCUGuGCaaGaCGGUCUuGCUGC-GC- -5'
23950 3' -53.2 NC_005262.1 + 43893 0.68 0.812479
Target:  5'- gCCGACAUGaagUCgaaggcGUCAGcGCGGCGCc -3'
miRNA:   3'- -GGCUGUGCa--AGa-----CGGUCuUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 42093 0.68 0.803118
Target:  5'- aUCGAgACGaUCUaCCGGAACGGCGa- -3'
miRNA:   3'- -GGCUgUGCaAGAcGGUCUUGCUGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.