miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 5' -62.5 NC_005262.1 + 15720 0.66 0.389842
Target:  5'- cGGCGCcgGGCGgcucgUCgCGGCaGGugcgaccGACGCGCUu -3'
miRNA:   3'- -CCGCG--CCGC-----AG-GCCGaCC-------UUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 49791 0.66 0.385619
Target:  5'- cGCGcCGGacgccccugcacCGUCCGGcCcgaucggccgcgcgaUGGAGCGCGCg -3'
miRNA:   3'- cCGC-GCC------------GCAGGCC-G---------------ACCUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 38548 0.66 0.382263
Target:  5'- cGGCGCaGGag-CCGGCguu-GCGCGCg -3'
miRNA:   3'- -CCGCG-CCgcaGGCCGaccuUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 12617 0.67 0.373958
Target:  5'- gGGcCGCcGCGUCguCGGCUGccugcuGCGCGCUc -3'
miRNA:   3'- -CC-GCGcCGCAG--GCCGACcu----UGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 17222 0.67 0.373958
Target:  5'- cGGCGCuGGCGUCgUGGUcgucgUGG-GCGuCGCg -3'
miRNA:   3'- -CCGCG-CCGCAG-GCCG-----ACCuUGC-GCGa -5'
23950 5' -62.5 NC_005262.1 + 57692 0.67 0.364965
Target:  5'- gGGCGCGGCaaggugcuUUCGGUaGGccgccacGACGCGCg -3'
miRNA:   3'- -CCGCGCCGc-------AGGCCGaCC-------UUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 46908 0.67 0.357718
Target:  5'- cGGUGCGGUGUggugCGGCcc-GGCGCGCg -3'
miRNA:   3'- -CCGCGCCGCAg---GCCGaccUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 50403 0.67 0.349786
Target:  5'- cGCGCGGCGaUCaGCgccgcGGAGCGCGa- -3'
miRNA:   3'- cCGCGCCGCaGGcCGa----CCUUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 5352 0.67 0.349786
Target:  5'- cGCGCacgccugccggGGCGUCCuugacgGGCaGGGACGCGg- -3'
miRNA:   3'- cCGCG-----------CCGCAGG------CCGaCCUUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 30827 0.67 0.341979
Target:  5'- cGGUGC-GCGUCuCGGC---GACGCGCa -3'
miRNA:   3'- -CCGCGcCGCAG-GCCGaccUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 33969 0.67 0.341979
Target:  5'- -aCGCGGCGUCgagcuGCUGGAcguCGUGCg -3'
miRNA:   3'- ccGCGCCGCAGgc---CGACCUu--GCGCGa -5'
23950 5' -62.5 NC_005262.1 + 4595 0.67 0.341979
Target:  5'- gGGCGUGaGCG-CCcGCaGGAACGgGCg -3'
miRNA:   3'- -CCGCGC-CGCaGGcCGaCCUUGCgCGa -5'
23950 5' -62.5 NC_005262.1 + 5190 0.67 0.341979
Target:  5'- gGGCGCgGGCGcggCCGGCgcgaccGAGgGCGUa -3'
miRNA:   3'- -CCGCG-CCGCa--GGCCGac----CUUgCGCGa -5'
23950 5' -62.5 NC_005262.1 + 46909 0.67 0.3343
Target:  5'- cGCGCagGGCGaUCCGGC--GAAgGCGCa -3'
miRNA:   3'- cCGCG--CCGC-AGGCCGacCUUgCGCGa -5'
23950 5' -62.5 NC_005262.1 + 43417 0.67 0.3343
Target:  5'- cGGCGCGGCGcucaacgucuaUCCGaucgacGGcGACGCGCUu -3'
miRNA:   3'- -CCGCGCCGC-----------AGGCcga---CC-UUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 12805 0.67 0.3343
Target:  5'- uGgGCGGCGcgcagCCGGCgcgugaagaaGGAGCGCGg- -3'
miRNA:   3'- cCgCGCCGCa----GGCCGa---------CCUUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 42119 0.67 0.3343
Target:  5'- aGCGCGGCG-CCGccGCUcaGGuuGCGCGUg -3'
miRNA:   3'- cCGCGCCGCaGGC--CGA--CCu-UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 60850 0.68 0.326747
Target:  5'- cGGCGUGGCGa-UGGCcgaGGcAAUGCGCg -3'
miRNA:   3'- -CCGCGCCGCagGCCGa--CC-UUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 11464 0.68 0.319321
Target:  5'- cGGCGauacGCGUCCGGCgccuuguuccGGAGCGCu-- -3'
miRNA:   3'- -CCGCgc--CGCAGGCCGa---------CCUUGCGcga -5'
23950 5' -62.5 NC_005262.1 + 61161 0.68 0.312023
Target:  5'- cGCgGCGGCGggCGaGCUGacGGGCGCGCg -3'
miRNA:   3'- cCG-CGCCGCagGC-CGAC--CUUGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.