miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 3' -55.3 NC_005262.1 + 1927 0.66 0.75029
Target:  5'- gGGUUGCGugGCUCGCuGGUcGUa--- -3'
miRNA:   3'- gUCAACGCugCGGGCG-CCAcUAcuug -5'
23951 3' -55.3 NC_005262.1 + 24399 0.66 0.75029
Target:  5'- -cGgcGCGcACGUCCGCgaaGGUGAUGGu- -3'
miRNA:   3'- guCaaCGC-UGCGGGCG---CCACUACUug -5'
23951 3' -55.3 NC_005262.1 + 47074 0.66 0.75029
Target:  5'- -cGgcGUGACGCCCGUGuccaaggaggucGUGAaGGACa -3'
miRNA:   3'- guCaaCGCUGCGGGCGC------------CACUaCUUG- -5'
23951 3' -55.3 NC_005262.1 + 22288 0.66 0.75029
Target:  5'- aCGGUguggGUGugGCCCGgauCGGUGAcggugUGAu- -3'
miRNA:   3'- -GUCAa---CGCugCGGGC---GCCACU-----ACUug -5'
23951 3' -55.3 NC_005262.1 + 42141 0.66 0.744094
Target:  5'- cCGGUcuacGCGGCGCCgggcccgguCGCGGccgaucgucuguacgUGAUGGGCg -3'
miRNA:   3'- -GUCAa---CGCUGCGG---------GCGCC---------------ACUACUUG- -5'
23951 3' -55.3 NC_005262.1 + 17784 0.67 0.708299
Target:  5'- gCAGc-GCGACGCCuUGCGcGUGcagGAACg -3'
miRNA:   3'- -GUCaaCGCUGCGG-GCGC-CACua-CUUG- -5'
23951 3' -55.3 NC_005262.1 + 36803 0.67 0.69759
Target:  5'- cCAG-UGCGGCGCgCUcgGCGGgcGUGAGCg -3'
miRNA:   3'- -GUCaACGCUGCG-GG--CGCCacUACUUG- -5'
23951 3' -55.3 NC_005262.1 + 17194 0.67 0.675994
Target:  5'- gCGGgaucUGUGGCGUCUGCGGcGA-GGACg -3'
miRNA:   3'- -GUCa---ACGCUGCGGGCGCCaCUaCUUG- -5'
23951 3' -55.3 NC_005262.1 + 4593 0.68 0.64332
Target:  5'- uCGGgcGUGAgCGCCCGCaggaacgggcGGUGAcgGAACu -3'
miRNA:   3'- -GUCaaCGCU-GCGGGCG----------CCACUa-CUUG- -5'
23951 3' -55.3 NC_005262.1 + 35642 0.68 0.610553
Target:  5'- gCAGUUGCGccgcGCGCUCGgGGaagaUGgcGAGCa -3'
miRNA:   3'- -GUCAACGC----UGCGGGCgCC----ACuaCUUG- -5'
23951 3' -55.3 NC_005262.1 + 7778 0.72 0.387746
Target:  5'- gCGGUUGCGGa--UCGCGGUGAUGcGCu -3'
miRNA:   3'- -GUCAACGCUgcgGGCGCCACUACuUG- -5'
23951 3' -55.3 NC_005262.1 + 14408 1.1 0.000987
Target:  5'- cCAGUUGCGACGCCCGCGGUGAUGAACg -3'
miRNA:   3'- -GUCAACGCUGCGGGCGCCACUACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.