miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 50574 0.68 0.37922
Target:  5'- aGAGgagCGUUGGCGGacGCGcCGGuUGCGCGc -3'
miRNA:   3'- gCUCa--GCAGUCGCU--CGC-GCC-GCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 13679 0.68 0.37922
Target:  5'- -----gGUCAGCGAGCGCucGGCcggcuucuguucGCGCGg -3'
miRNA:   3'- gcucagCAGUCGCUCGCG--CCG------------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 50312 0.68 0.37092
Target:  5'- ---uUCGcCAGCGAguaGCGCGcgacGCGCGCGg -3'
miRNA:   3'- gcucAGCaGUCGCU---CGCGC----CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 3713 0.68 0.37092
Target:  5'- uCGuGccCGUCAGCGcgucgcGCGCGGCGuUGCGc -3'
miRNA:   3'- -GCuCa-GCAGUCGCu-----CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 52800 0.68 0.370097
Target:  5'- ---cUCGUCAgccguGCGAGCGCgaccggcguucccGGCGCGCc -3'
miRNA:   3'- gcucAGCAGU-----CGCUCGCG-------------CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 8895 0.68 0.362746
Target:  5'- gCGAGcCGUCGaacuGGCGCGGCGCGa- -3'
miRNA:   3'- -GCUCaGCAGUcgc-UCGCGCCGCGCgc -5'
23951 5' -61.1 NC_005262.1 + 13521 0.68 0.362746
Target:  5'- aCGGG-C-UCGGCcGGCGCgGGCGCGCc -3'
miRNA:   3'- -GCUCaGcAGUCGcUCGCG-CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 44162 0.68 0.354697
Target:  5'- gCGA-UCGggCAG-GAGCGCGGCG-GCGa -3'
miRNA:   3'- -GCUcAGCa-GUCgCUCGCGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 52276 0.68 0.352307
Target:  5'- cCGAGUCGcauguUCAGgcacacgaugcagcCGAGCuCGGCGaCGCGg -3'
miRNA:   3'- -GCUCAGC-----AGUC--------------GCUCGcGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 57935 0.68 0.346775
Target:  5'- -cGGUCG-CGGCauucaacguggaGGGCGCGaGCGCGCu -3'
miRNA:   3'- gcUCAGCaGUCG------------CUCGCGC-CGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 34124 0.68 0.346775
Target:  5'- gCGGGUUG--GGCGGGCuGCGcGgGCGCGg -3'
miRNA:   3'- -GCUCAGCagUCGCUCG-CGC-CgCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 12644 0.69 0.331314
Target:  5'- ----cCGUgaagaagaAGCGcGCGCGGCGCGCGg -3'
miRNA:   3'- gcucaGCAg-------UCGCuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 61157 0.69 0.316366
Target:  5'- aGA-UCGcggCGGCGGGCGagcugacgGGCGCGCGg -3'
miRNA:   3'- gCUcAGCa--GUCGCUCGCg-------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 34571 0.69 0.309085
Target:  5'- cCGAacGUCGUguGCGcgccGUGCGGCGcCGUGa -3'
miRNA:   3'- -GCU--CAGCAguCGCu---CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 49217 0.7 0.288012
Target:  5'- cCGAGggCGgccUCGGCG-GCGCGcaguccGCGCGCGa -3'
miRNA:   3'- -GCUCa-GC---AGUCGCuCGCGC------CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17353 0.7 0.288012
Target:  5'- uCGGGUC--CGGCGcGgGCGGCGCgGCGg -3'
miRNA:   3'- -GCUCAGcaGUCGCuCgCGCCGCG-CGC- -5'
23951 5' -61.1 NC_005262.1 + 43394 0.7 0.288012
Target:  5'- gCGAGcaUCGgCGGCGAGCucaaCGGCGCgGCGc -3'
miRNA:   3'- -GCUC--AGCaGUCGCUCGc---GCCGCG-CGC- -5'
23951 5' -61.1 NC_005262.1 + 43902 0.7 0.268085
Target:  5'- -aAGUCGaaGGCGucAGCGCGGCGCcaaccGCGg -3'
miRNA:   3'- gcUCAGCagUCGC--UCGCGCCGCG-----CGC- -5'
23951 5' -61.1 NC_005262.1 + 20573 0.71 0.255429
Target:  5'- aCGAGcagccCGGCGAgcagcGCGCGGCGCGCc -3'
miRNA:   3'- -GCUCagca-GUCGCU-----CGCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 33932 0.71 0.243266
Target:  5'- cCGAGcUCG-CGGCGGGCacGCGGCaaGCGa -3'
miRNA:   3'- -GCUC-AGCaGUCGCUCG--CGCCGcgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.