miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 50312 0.68 0.37092
Target:  5'- ---uUCGcCAGCGAguaGCGCGcgacGCGCGCGg -3'
miRNA:   3'- gcucAGCaGUCGCU---CGCGC----CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 49217 0.7 0.288012
Target:  5'- cCGAGggCGgccUCGGCG-GCGCGcaguccGCGCGCGa -3'
miRNA:   3'- -GCUCa-GC---AGUCGCuCGCGC------CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 49211 0.66 0.497598
Target:  5'- gGuGUUGU---UGGGUGCGGUGCGCGu -3'
miRNA:   3'- gCuCAGCAgucGCUCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 48476 0.66 0.487872
Target:  5'- gCGAGccgCGUgGGCacGgGCGGCGCGaCGg -3'
miRNA:   3'- -GCUCa--GCAgUCGcuCgCGCCGCGC-GC- -5'
23951 5' -61.1 NC_005262.1 + 46903 0.67 0.422538
Target:  5'- gCGGG-CGgugCGGUGugguGCGgccCGGCGCGCGg -3'
miRNA:   3'- -GCUCaGCa--GUCGCu---CGC---GCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 46288 0.75 0.117779
Target:  5'- --cGUCGUCAggcugccgaucgacGCGucgcGCGCGGCGCGCGc -3'
miRNA:   3'- gcuCAGCAGU--------------CGCu---CGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 44162 0.68 0.354697
Target:  5'- gCGA-UCGggCAG-GAGCGCGGCG-GCGa -3'
miRNA:   3'- -GCUcAGCa-GUCgCUCGCGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 43902 0.7 0.268085
Target:  5'- -aAGUCGaaGGCGucAGCGCGGCGCcaaccGCGg -3'
miRNA:   3'- gcUCAGCagUCGC--UCGCGCCGCG-----CGC- -5'
23951 5' -61.1 NC_005262.1 + 43771 0.71 0.237368
Target:  5'- uCGGG-C-UCAGCGAGCGCGuaGUGCa -3'
miRNA:   3'- -GCUCaGcAGUCGCUCGCGCcgCGCGc -5'
23951 5' -61.1 NC_005262.1 + 43394 0.7 0.288012
Target:  5'- gCGAGcaUCGgCGGCGAGCucaaCGGCGCgGCGc -3'
miRNA:   3'- -GCUC--AGCaGUCGCUCGc---GCCGCG-CGC- -5'
23951 5' -61.1 NC_005262.1 + 43286 0.76 0.112579
Target:  5'- -aGGUCGUC-GCGAGCGCcgcgccgauGGUGCGCGc -3'
miRNA:   3'- gcUCAGCAGuCGCUCGCG---------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 42172 0.66 0.458314
Target:  5'- cCGA-UCGUCuGUacgugauGGGCGaCGGCGCGCc -3'
miRNA:   3'- -GCUcAGCAGuCG-------CUCGC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 41373 0.75 0.118719
Target:  5'- gGGGUUGcCGGCGAGCagGCGGCGCuCGa -3'
miRNA:   3'- gCUCAGCaGUCGCUCG--CGCCGCGcGC- -5'
23951 5' -61.1 NC_005262.1 + 40872 0.72 0.220389
Target:  5'- gGAGcauggCGUCGGCGAGCGCGuaGCagucuuccGCGa -3'
miRNA:   3'- gCUCa----GCAGUCGCUCGCGCcgCG--------CGC- -5'
23951 5' -61.1 NC_005262.1 + 38670 0.67 0.412754
Target:  5'- aGGGUCGgacaagCAGCGcgccAGCucauccuccgugaGCGGCGCGUc -3'
miRNA:   3'- gCUCAGCa-----GUCGC----UCG-------------CGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 36244 0.67 0.416295
Target:  5'- uCGAGaaguuugacaagaUCGUCAcCGAugcagaugcgugggcGCGCGGCGaCGCGa -3'
miRNA:   3'- -GCUC-------------AGCAGUcGCU---------------CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 35835 0.65 0.503476
Target:  5'- gGAGcggCGUCGGCgccgcgaccgcccaGAuguuuguGCGCGGCGaCGCGc -3'
miRNA:   3'- gCUCa--GCAGUCG--------------CU-------CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 35624 0.66 0.459253
Target:  5'- -cAGUCGUcCGGCaacGGCacGCGGCGgGCGa -3'
miRNA:   3'- gcUCAGCA-GUCGc--UCG--CGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 34571 0.69 0.309085
Target:  5'- cCGAacGUCGUguGCGcgccGUGCGGCGcCGUGa -3'
miRNA:   3'- -GCU--CAGCAguCGCu---CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 34394 0.67 0.396187
Target:  5'- uCGAG-CGUC-GCGAuCGCGaGCGCGUc -3'
miRNA:   3'- -GCUCaGCAGuCGCUcGCGC-CGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.