Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23951 | 5' | -61.1 | NC_005262.1 | + | 34124 | 0.68 | 0.346775 |
Target: 5'- gCGGGUUG--GGCGGGCuGCGcGgGCGCGg -3' miRNA: 3'- -GCUCAGCagUCGCUCG-CGC-CgCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 33932 | 0.71 | 0.243266 |
Target: 5'- cCGAGcUCG-CGGCGGGCacGCGGCaaGCGa -3' miRNA: 3'- -GCUC-AGCaGUCGCUCG--CGCCGcgCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 32601 | 0.67 | 0.396187 |
Target: 5'- uGAcUUGUCGGCGAGCGUGauCGuCGCGu -3' miRNA: 3'- gCUcAGCAGUCGCUCGCGCc-GC-GCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 30864 | 0.67 | 0.413637 |
Target: 5'- gGAGcgaUCGUgaaggcgcUGGCGAGCGuCGcGCGUGCGa -3' miRNA: 3'- gCUC---AGCA--------GUCGCUCGC-GC-CGCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 29658 | 0.66 | 0.449913 |
Target: 5'- gCGGGUagaCGUagaAGau-GCGCGGUGCGCGc -3' miRNA: 3'- -GCUCA---GCAg--UCgcuCGCGCCGCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 27276 | 0.67 | 0.422538 |
Target: 5'- gGGGuUCGaCAGCaacaucauGAGCGCGGCGaGCa -3' miRNA: 3'- gCUC-AGCaGUCG--------CUCGCGCCGCgCGc -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 26018 | 0.66 | 0.478237 |
Target: 5'- cCGAGggcaCGUacuacgcccagCAGCucGcCGCGGCGCGCa -3' miRNA: 3'- -GCUCa---GCA-----------GUCGcuC-GCGCCGCGCGc -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 23943 | 0.8 | 0.058828 |
Target: 5'- uGGGUCcagcaagcUCGGCGAGUGUGGCGCGCa -3' miRNA: 3'- gCUCAGc-------AGUCGCUCGCGCCGCGCGc -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 22667 | 0.66 | 0.459253 |
Target: 5'- aCGuGUCGUC--CGAGCGCGccgugaCGCGCa -3' miRNA: 3'- -GCuCAGCAGucGCUCGCGCc-----GCGCGc -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 21803 | 0.67 | 0.408353 |
Target: 5'- gCGGGcguUCGUC-GCGuucuGCGCGGCggugucaggcaacagGCGCGg -3' miRNA: 3'- -GCUC---AGCAGuCGCu---CGCGCCG---------------CGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 21542 | 0.77 | 0.093357 |
Target: 5'- --cGUCGccgCAGUGAGCGCGGCGCuCGg -3' miRNA: 3'- gcuCAGCa--GUCGCUCGCGCCGCGcGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 20573 | 0.71 | 0.255429 |
Target: 5'- aCGAGcagccCGGCGAgcagcGCGCGGCGCGCc -3' miRNA: 3'- -GCUCagca-GUCGCU-----CGCGCCGCGCGc -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 20487 | 0.68 | 0.387643 |
Target: 5'- gCGAGUgCGUaaucGCGcgcaccaucGGCGCGGCGCucGCGa -3' miRNA: 3'- -GCUCA-GCAgu--CGC---------UCGCGCCGCG--CGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 20090 | 0.71 | 0.23159 |
Target: 5'- ---cUUGUCGGUGAGCGCGucgcCGCGCGa -3' miRNA: 3'- gcucAGCAGUCGCUCGCGCc---GCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 19378 | 0.76 | 0.106738 |
Target: 5'- aCGAgGUCGcCAuCGuGUGCGGCGCGCGg -3' miRNA: 3'- -GCU-CAGCaGUcGCuCGCGCCGCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 17585 | 0.66 | 0.478237 |
Target: 5'- cCGAGgagaaGcUGGCG-GCGCaGCGCGCGg -3' miRNA: 3'- -GCUCag---CaGUCGCuCGCGcCGCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 17555 | 0.71 | 0.237368 |
Target: 5'- gCGAGgCGgCAGCc-GCgGCGGCGCGCGa -3' miRNA: 3'- -GCUCaGCaGUCGcuCG-CGCCGCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 17474 | 0.66 | 0.478237 |
Target: 5'- cCGAGUUccaggacgaAGCGcGCGCcGCGCGCGa -3' miRNA: 3'- -GCUCAGcag------UCGCuCGCGcCGCGCGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 17353 | 0.7 | 0.288012 |
Target: 5'- uCGGGUC--CGGCGcGgGCGGCGCgGCGg -3' miRNA: 3'- -GCUCAGcaGUCGCuCgCGCCGCG-CGC- -5' |
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23951 | 5' | -61.1 | NC_005262.1 | + | 17054 | 0.71 | 0.22593 |
Target: 5'- gCGAGcUCGUCGcGCGcacGGCGCcgauaGGCGCGCc -3' miRNA: 3'- -GCUC-AGCAGU-CGC---UCGCG-----CCGCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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