miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 50924 0.67 0.396187
Target:  5'- aCGAG-CGUCAcCGuGCaCGGCaGCGCGa -3'
miRNA:   3'- -GCUCaGCAGUcGCuCGcGCCG-CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 32601 0.67 0.396187
Target:  5'- uGAcUUGUCGGCGAGCGUGauCGuCGCGu -3'
miRNA:   3'- gCUcAGCAGUCGCUCGCGCc-GC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 50574 0.68 0.37922
Target:  5'- aGAGgagCGUUGGCGGacGCGcCGGuUGCGCGc -3'
miRNA:   3'- gCUCa--GCAGUCGCU--CGC-GCC-GCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 13679 0.68 0.37922
Target:  5'- -----gGUCAGCGAGCGCucGGCcggcuucuguucGCGCGg -3'
miRNA:   3'- gcucagCAGUCGCUCGCG--CCG------------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 50312 0.68 0.37092
Target:  5'- ---uUCGcCAGCGAguaGCGCGcgacGCGCGCGg -3'
miRNA:   3'- gcucAGCaGUCGCU---CGCGC----CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 3713 0.68 0.37092
Target:  5'- uCGuGccCGUCAGCGcgucgcGCGCGGCGuUGCGc -3'
miRNA:   3'- -GCuCa-GCAGUCGCu-----CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 52800 0.68 0.370097
Target:  5'- ---cUCGUCAgccguGCGAGCGCgaccggcguucccGGCGCGCc -3'
miRNA:   3'- gcucAGCAGU-----CGCUCGCG-------------CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 38670 0.67 0.412754
Target:  5'- aGGGUCGgacaagCAGCGcgccAGCucauccuccgugaGCGGCGCGUc -3'
miRNA:   3'- gCUCAGCa-----GUCGC----UCG-------------CGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 30864 0.67 0.413637
Target:  5'- gGAGcgaUCGUgaaggcgcUGGCGAGCGuCGcGCGUGCGa -3'
miRNA:   3'- gCUC---AGCA--------GUCGCUCGC-GC-CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 46903 0.67 0.422538
Target:  5'- gCGGG-CGgugCGGUGugguGCGgccCGGCGCGCGg -3'
miRNA:   3'- -GCUCaGCa--GUCGCu---CGC---GCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 49211 0.66 0.497598
Target:  5'- gGuGUUGU---UGGGUGCGGUGCGCGu -3'
miRNA:   3'- gCuCAGCAgucGCUCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 59938 0.66 0.487872
Target:  5'- gGAcuGUCGgccuaccaUCAGCGGcacgucacGCGCGGgGCGCu -3'
miRNA:   3'- gCU--CAGC--------AGUCGCU--------CGCGCCgCGCGc -5'
23951 5' -61.1 NC_005262.1 + 51179 0.66 0.487872
Target:  5'- cCGAGcaaugCGGCGAGgGagGGCGCGCu -3'
miRNA:   3'- -GCUCagca-GUCGCUCgCg-CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 52328 0.66 0.468696
Target:  5'- uGuGcUCG-CGcGCGAGCGCGGUaggcacgauGCGCGg -3'
miRNA:   3'- gCuC-AGCaGU-CGCUCGCGCCG---------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 22667 0.66 0.459253
Target:  5'- aCGuGUCGUC--CGAGCGCGccgugaCGCGCa -3'
miRNA:   3'- -GCuCAGCAGucGCUCGCGCc-----GCGCGc -5'
23951 5' -61.1 NC_005262.1 + 11078 0.66 0.459253
Target:  5'- ---uUCGUCAGC-AGCGCGGCcucguccgGCGuCGg -3'
miRNA:   3'- gcucAGCAGUCGcUCGCGCCG--------CGC-GC- -5'
23951 5' -61.1 NC_005262.1 + 8541 0.66 0.453636
Target:  5'- cCGAGUgCGUgaugaugaccgcaucCGGauuguuGAGCGCGGCcuGCGCGa -3'
miRNA:   3'- -GCUCA-GCA---------------GUCg-----CUCGCGCCG--CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 29658 0.66 0.449913
Target:  5'- gCGGGUagaCGUagaAGau-GCGCGGUGCGCGc -3'
miRNA:   3'- -GCUCA---GCAg--UCgcuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 6880 0.66 0.448985
Target:  5'- uCGAGcgcggccuugaucUCGcCGGCGAGCGUGuuguCGCGCu -3'
miRNA:   3'- -GCUC-------------AGCaGUCGCUCGCGCc---GCGCGc -5'
23951 5' -61.1 NC_005262.1 + 13215 0.67 0.439761
Target:  5'- cCGGGUUGagcggCAGCGGGCucgggcuGCGGUugaacggguGCGCGa -3'
miRNA:   3'- -GCUCAGCa----GUCGCUCG-------CGCCG---------CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.