miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 58634 0.68 0.37922
Target:  5'- aGGcUCGgCAGuCGAGCGgccgGGCGCGCGa -3'
miRNA:   3'- gCUcAGCaGUC-GCUCGCg---CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 20487 0.68 0.387643
Target:  5'- gCGAGUgCGUaaucGCGcgcaccaucGGCGCGGCGCucGCGa -3'
miRNA:   3'- -GCUCA-GCAgu--CGC---------UCGCGCCGCG--CGC- -5'
23951 5' -61.1 NC_005262.1 + 7524 0.68 0.387643
Target:  5'- uCGGGcagguUCGGCGGcGCGuCGGCGCGCu -3'
miRNA:   3'- -GCUCagc--AGUCGCU-CGC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 48476 0.66 0.487872
Target:  5'- gCGAGccgCGUgGGCacGgGCGGCGCGaCGg -3'
miRNA:   3'- -GCUCa--GCAgUCGcuCgCGCCGCGC-GC- -5'
23951 5' -61.1 NC_005262.1 + 26018 0.66 0.478237
Target:  5'- cCGAGggcaCGUacuacgcccagCAGCucGcCGCGGCGCGCa -3'
miRNA:   3'- -GCUCa---GCA-----------GUCGcuC-GCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 17585 0.66 0.478237
Target:  5'- cCGAGgagaaGcUGGCG-GCGCaGCGCGCGg -3'
miRNA:   3'- -GCUCag---CaGUCGCuCGCGcCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17474 0.66 0.478237
Target:  5'- cCGAGUUccaggacgaAGCGcGCGCcGCGCGCGa -3'
miRNA:   3'- -GCUCAGcag------UCGCuCGCGcCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 35624 0.66 0.459253
Target:  5'- -cAGUCGUcCGGCaacGGCacGCGGCGgGCGa -3'
miRNA:   3'- gcUCAGCA-GUCGc--UCG--CGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 42172 0.66 0.458314
Target:  5'- cCGA-UCGUCuGUacgugauGGGCGaCGGCGCGCc -3'
miRNA:   3'- -GCUcAGCAGuCG-------CUCGC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 13457 0.66 0.478237
Target:  5'- aGGGUCG-CAa-GGGCGCGaagcccGCGCGCGu -3'
miRNA:   3'- gCUCAGCaGUcgCUCGCGC------CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 56728 0.66 0.450842
Target:  5'- cCGAGgCGUCGGCGuucgacauggccgccGCGCuGGCGUcggGCGa -3'
miRNA:   3'- -GCUCaGCAGUCGCu--------------CGCG-CCGCG---CGC- -5'
23951 5' -61.1 NC_005262.1 + 63063 0.67 0.440678
Target:  5'- cCGGcaCGUCAucGCGGGCgaguaugcgGCGGCGUGCa -3'
miRNA:   3'- -GCUcaGCAGU--CGCUCG---------CGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 62774 0.67 0.431552
Target:  5'- uGGGUCGcCAGCGAGgGauuCGCGCc -3'
miRNA:   3'- gCUCAGCaGUCGCUCgCgccGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 10567 0.67 0.422538
Target:  5'- gCGcAGcCG-CAGCGuaccgcggagcAGCGCGGCGCgaGCGg -3'
miRNA:   3'- -GC-UCaGCaGUCGC-----------UCGCGCCGCG--CGC- -5'
23951 5' -61.1 NC_005262.1 + 27276 0.67 0.422538
Target:  5'- gGGGuUCGaCAGCaacaucauGAGCGCGGCGaGCa -3'
miRNA:   3'- gCUC-AGCaGUCG--------CUCGCGCCGCgCGc -5'
23951 5' -61.1 NC_005262.1 + 36244 0.67 0.416295
Target:  5'- uCGAGaaguuugacaagaUCGUCAcCGAugcagaugcgugggcGCGCGGCGaCGCGa -3'
miRNA:   3'- -GCUC-------------AGCAGUcGCU---------------CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 56332 0.67 0.413637
Target:  5'- uCGAaaagCGUCuGGuCGAGgGCGGCGUGCc -3'
miRNA:   3'- -GCUca--GCAG-UC-GCUCgCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 8231 0.67 0.404853
Target:  5'- uGAGcUGUCGGCGAagcucgaaGC-CGaGCGCGCGa -3'
miRNA:   3'- gCUCaGCAGUCGCU--------CGcGC-CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 52142 0.67 0.396187
Target:  5'- --uGUCGuUCuGgGAG-GCGGCGCGCa -3'
miRNA:   3'- gcuCAGC-AGuCgCUCgCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 35835 0.65 0.503476
Target:  5'- gGAGcggCGUCGGCgccgcgaccgcccaGAuguuuguGCGCGGCGaCGCGc -3'
miRNA:   3'- gCUCa--GCAGUCG--------------CU-------CGCGCCGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.