miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23952 3' -55 NC_005262.1 + 25388 0.65 0.809318
Target:  5'- --cCGGcCUgGAugGUguCGCCAUCgGg -3'
miRNA:   3'- cuaGCC-GAgCUugCAguGCGGUAGgC- -5'
23952 3' -55 NC_005262.1 + 35789 0.65 0.809318
Target:  5'- aGAUCGGCUCGc-CGUCGuuCuCGUCCu -3'
miRNA:   3'- -CUAGCCGAGCuuGCAGUgcG-GUAGGc -5'
23952 3' -55 NC_005262.1 + 9364 0.65 0.809318
Target:  5'- cGGUCGGCgcgCGcGGCGgccUGCGCC-UCCGc -3'
miRNA:   3'- -CUAGCCGa--GC-UUGCa--GUGCGGuAGGC- -5'
23952 3' -55 NC_005262.1 + 51342 0.65 0.808386
Target:  5'- aGAUCGaauccgccaugcaGCUCGGcAC--CGCGCCGUCCGc -3'
miRNA:   3'- -CUAGC-------------CGAGCU-UGcaGUGCGGUAGGC- -5'
23952 3' -55 NC_005262.1 + 30868 0.66 0.799923
Target:  5'- cGAUCgugaaGGCgcuggCGAGCGUCgcgcgugcgACGCCG-CCGg -3'
miRNA:   3'- -CUAG-----CCGa----GCUUGCAG---------UGCGGUaGGC- -5'
23952 3' -55 NC_005262.1 + 44146 0.66 0.799923
Target:  5'- --cCGGC-CGGACGcgCGCGCgAUCgGg -3'
miRNA:   3'- cuaGCCGaGCUUGCa-GUGCGgUAGgC- -5'
23952 3' -55 NC_005262.1 + 27206 0.66 0.799923
Target:  5'- uAUCGGCcgCGuucCGUuacacugaucCGCGCCAUCUGg -3'
miRNA:   3'- cUAGCCGa-GCuu-GCA----------GUGCGGUAGGC- -5'
23952 3' -55 NC_005262.1 + 29566 0.66 0.798975
Target:  5'- -cUCGGCgcccaugUCGAGCGUguCGCCcgaagCCGc -3'
miRNA:   3'- cuAGCCG-------AGCUUGCAguGCGGua---GGC- -5'
23952 3' -55 NC_005262.1 + 5090 0.66 0.790359
Target:  5'- cGAcCGGCUCG-GCGgugCGCGCCcgGUUCa -3'
miRNA:   3'- -CUaGCCGAGCuUGCa--GUGCGG--UAGGc -5'
23952 3' -55 NC_005262.1 + 10072 0.66 0.790359
Target:  5'- aGUCGcGUUCGAGCGcCACgGCC-UUCGa -3'
miRNA:   3'- cUAGC-CGAGCUUGCaGUG-CGGuAGGC- -5'
23952 3' -55 NC_005262.1 + 27156 0.66 0.790359
Target:  5'- -uUCGaGCcggCGGACaUgGCGCCAUCCa -3'
miRNA:   3'- cuAGC-CGa--GCUUGcAgUGCGGUAGGc -5'
23952 3' -55 NC_005262.1 + 33189 0.66 0.780635
Target:  5'- --gCGGCUCGAuCuUCGCGCCcUUCa -3'
miRNA:   3'- cuaGCCGAGCUuGcAGUGCGGuAGGc -5'
23952 3' -55 NC_005262.1 + 6453 0.66 0.770762
Target:  5'- -uUCGGCUCcGGCGagACGCCGgcaUCGa -3'
miRNA:   3'- cuAGCCGAGcUUGCagUGCGGUa--GGC- -5'
23952 3' -55 NC_005262.1 + 16999 0.66 0.770762
Target:  5'- --cCGGC-CGAGCG-CGCGCUcgUCGu -3'
miRNA:   3'- cuaGCCGaGCUUGCaGUGCGGuaGGC- -5'
23952 3' -55 NC_005262.1 + 59692 0.66 0.770762
Target:  5'- cGAUCGGCgugccgccacgCGGGCGcUACGUCG-CCGg -3'
miRNA:   3'- -CUAGCCGa----------GCUUGCaGUGCGGUaGGC- -5'
23952 3' -55 NC_005262.1 + 6850 0.66 0.76075
Target:  5'- --aCGGCUCG-ACGaUCAgGCCguaGUCCu -3'
miRNA:   3'- cuaGCCGAGCuUGC-AGUgCGG---UAGGc -5'
23952 3' -55 NC_005262.1 + 33359 0.67 0.750611
Target:  5'- --gCGGCgaucuccuucaCGAACGUgucgaGCGCCGUCCa -3'
miRNA:   3'- cuaGCCGa----------GCUUGCAg----UGCGGUAGGc -5'
23952 3' -55 NC_005262.1 + 4465 0.67 0.750611
Target:  5'- uGAUCGcGUUCGcaucagccguCGUCAugcccgagcCGCCGUCCGg -3'
miRNA:   3'- -CUAGC-CGAGCuu--------GCAGU---------GCGGUAGGC- -5'
23952 3' -55 NC_005262.1 + 23408 0.67 0.74447
Target:  5'- --gCGGCgaugCGGcgggcagcaugagccGCGUCAUcgaGCCGUCCGa -3'
miRNA:   3'- cuaGCCGa---GCU---------------UGCAGUG---CGGUAGGC- -5'
23952 3' -55 NC_005262.1 + 42578 0.67 0.740355
Target:  5'- -cUC-GCUCGAAUGgaaCGCGCCG-CCGg -3'
miRNA:   3'- cuAGcCGAGCUUGCa--GUGCGGUaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.