miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23952 5' -58.7 NC_005262.1 + 5976 0.66 0.564171
Target:  5'- gGUCGGcuuuugcCGGccgGCUGCUGCUCGUUGcUCa -3'
miRNA:   3'- -CAGUCc------GCCa--UGACGACGGGCAGC-AG- -5'
23952 5' -58.7 NC_005262.1 + 6383 0.66 0.553644
Target:  5'- aGUCAGGUcGaGCgUGCUGCC-GUCGUUu -3'
miRNA:   3'- -CAGUCCGcCaUG-ACGACGGgCAGCAG- -5'
23952 5' -58.7 NC_005262.1 + 38575 0.67 0.491942
Target:  5'- uUCGGGCGGaaggGCaGCacgaGCCCuucGUCGUCg -3'
miRNA:   3'- cAGUCCGCCa---UGaCGa---CGGG---CAGCAG- -5'
23952 5' -58.7 NC_005262.1 + 46903 0.67 0.461318
Target:  5'- -gCGGGCGGUGCgguguggUGCgGCCCGgcgCG-Cg -3'
miRNA:   3'- caGUCCGCCAUG-------ACGaCGGGCa--GCaG- -5'
23952 5' -58.7 NC_005262.1 + 14403 0.68 0.452617
Target:  5'- gGUUuGGCGGUGCgucGCcucaUGCCUGUCGa- -3'
miRNA:   3'- -CAGuCCGCCAUGa--CG----ACGGGCAGCag -5'
23952 5' -58.7 NC_005262.1 + 10210 0.68 0.452617
Target:  5'- cGUUuGcGCGGUACaUGCUGCCgGUCa-- -3'
miRNA:   3'- -CAGuC-CGCCAUG-ACGACGGgCAGcag -5'
23952 5' -58.7 NC_005262.1 + 29425 0.68 0.452617
Target:  5'- aGUU-GGCGGUGguCUGCUGgUUGUUGUCg -3'
miRNA:   3'- -CAGuCCGCCAU--GACGACgGGCAGCAG- -5'
23952 5' -58.7 NC_005262.1 + 5707 0.68 0.443054
Target:  5'- aUCAGGCGGU--UGUUGCC-GUCG-Cg -3'
miRNA:   3'- cAGUCCGCCAugACGACGGgCAGCaG- -5'
23952 5' -58.7 NC_005262.1 + 52745 0.68 0.443054
Target:  5'- cUCAGGCGacGCUGCgGCCUGUUGc- -3'
miRNA:   3'- cAGUCCGCcaUGACGaCGGGCAGCag -5'
23952 5' -58.7 NC_005262.1 + 37154 0.68 0.420579
Target:  5'- aGUCAGGCGGUGCgccagcuacgcggGCgcuucgauuUGCCCG-CGg- -3'
miRNA:   3'- -CAGUCCGCCAUGa------------CG---------ACGGGCaGCag -5'
23952 5' -58.7 NC_005262.1 + 12559 0.68 0.415068
Target:  5'- gGUCGcGGCGGcgcucgucgagcUGCUGCUGCCgcCGgcgaggCGUCg -3'
miRNA:   3'- -CAGU-CCGCC------------AUGACGACGG--GCa-----GCAG- -5'
23952 5' -58.7 NC_005262.1 + 45911 0.69 0.379493
Target:  5'- aUCGGGCGGUGCUcGaugUGCguuCCGUgGUCg -3'
miRNA:   3'- cAGUCCGCCAUGA-Cg--ACG---GGCAgCAG- -5'
23952 5' -58.7 NC_005262.1 + 30764 0.71 0.273885
Target:  5'- cGUCGGGCGGUacgucagcaucagGCgcagcuuggcguugGCUGCCUG-CGUCu -3'
miRNA:   3'- -CAGUCCGCCA-------------UGa-------------CGACGGGCaGCAG- -5'
23952 5' -58.7 NC_005262.1 + 6684 0.72 0.233817
Target:  5'- ---cGGCGGaACUGgaGCCCGUCGa- -3'
miRNA:   3'- caguCCGCCaUGACgaCGGGCAGCag -5'
23952 5' -58.7 NC_005262.1 + 13880 1.1 0.000449
Target:  5'- cGUCAGGCGGUACUGCUGCCCGUCGUCg -3'
miRNA:   3'- -CAGUCCGCCAUGACGACGGGCAGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.