miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 3' -58.5 NC_005262.1 + 32889 0.68 0.425481
Target:  5'- cGCGucgaaCGUCGGCcaaGCCgGCGGCGUc -3'
miRNA:   3'- aCGCuaac-GCAGCCG---UGGaCGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 33884 0.68 0.41616
Target:  5'- cGCGAgacgaucgUGCGUCGGC-Cg-GCGGCc- -3'
miRNA:   3'- aCGCUa-------ACGCAGCCGuGgaCGCCGua -5'
23953 3' -58.5 NC_005262.1 + 62656 0.68 0.413387
Target:  5'- uUGCGA--GCGUCGGggguggguuuagucCGCCcgGCGGCGg -3'
miRNA:   3'- -ACGCUaaCGCAGCC--------------GUGGa-CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 52366 0.68 0.406964
Target:  5'- cGCGGc-GUGUCGcGCACCUuCGGCGg -3'
miRNA:   3'- aCGCUaaCGCAGC-CGUGGAcGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 32738 0.69 0.362952
Target:  5'- gGCGAgcGCGUCGGCgucggucagcACCagcagGCGGUAc -3'
miRNA:   3'- aCGCUaaCGCAGCCG----------UGGa----CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 29512 0.69 0.354556
Target:  5'- cGCGAggGCGUCGGUGCCgucaagGauGCGa -3'
miRNA:   3'- aCGCUaaCGCAGCCGUGGa-----CgcCGUa -5'
23953 3' -58.5 NC_005262.1 + 22318 0.69 0.346297
Target:  5'- gUGUGAUugUGCGcCGGCAUCUG-GGCu- -3'
miRNA:   3'- -ACGCUA--ACGCaGCCGUGGACgCCGua -5'
23953 3' -58.5 NC_005262.1 + 12246 0.69 0.346297
Target:  5'- aUGCGGUcGCGUCgauggucgGGCACCUGUcgaucgcggccGGCGa -3'
miRNA:   3'- -ACGCUAaCGCAG--------CCGUGGACG-----------CCGUa -5'
23953 3' -58.5 NC_005262.1 + 11896 0.7 0.307092
Target:  5'- gGCGAa-GCgGUCGGUGCCguucgGCGGCGUc -3'
miRNA:   3'- aCGCUaaCG-CAGCCGUGGa----CGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 2653 0.71 0.292388
Target:  5'- aUGCc--UGCG-CGGCGCCggGCGGCGUc -3'
miRNA:   3'- -ACGcuaACGCaGCCGUGGa-CGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 4396 0.71 0.27824
Target:  5'- uUGCGcgUGCGaugUCGcGCGCCUGCuGCGc -3'
miRNA:   3'- -ACGCuaACGC---AGC-CGUGGACGcCGUa -5'
23953 3' -58.5 NC_005262.1 + 48475 0.73 0.194129
Target:  5'- cGCGAgccGCGUgGGCACggGCGGCGc -3'
miRNA:   3'- aCGCUaa-CGCAgCCGUGgaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 15698 0.74 0.184112
Target:  5'- gGCGcgUcacaucaucgcGCGUCGGCGCCggGCGGCu- -3'
miRNA:   3'- aCGCuaA-----------CGCAGCCGUGGa-CGCCGua -5'
23953 3' -58.5 NC_005262.1 + 15277 0.74 0.179276
Target:  5'- cGCGAUUGCagGUCGaGCgcgcuguuACCUGCGGCu- -3'
miRNA:   3'- aCGCUAACG--CAGC-CG--------UGGACGCCGua -5'
23953 3' -58.5 NC_005262.1 + 45874 0.75 0.144503
Target:  5'- cGCcGUUgGCGUCGGCGCCgaucgGCGGCu- -3'
miRNA:   3'- aCGcUAA-CGCAGCCGUGGa----CGCCGua -5'
23953 3' -58.5 NC_005262.1 + 12930 1.05 0.000925
Target:  5'- gUGCGAUUGCGUCGGCACCUGCGGCAUu -3'
miRNA:   3'- -ACGCUAACGCAGCCGUGGACGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.