Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 34006 | 0.71 | 0.297581 |
|
Target: 5'- aGGuUGCUGGG-GUGCCgCGcCgUCCGGCa -3' miRNA: 3'- -CCuACGGCUCgCACGG-GCaG-AGGCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 23674 | 0.72 | 0.233472 |
|
Target: 5'- uGGAUGCCGcccgagcggcGCGUGUggGUCUaCCGGCg -3' miRNA: 3'- -CCUACGGCu---------CGCACGggCAGA-GGCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 9470 | 0.72 | 0.245293 |
|
Target: 5'- aGGUGCCGAGCGcGUCgaugaCGUC-CUGGCg -3' miRNA: 3'- cCUACGGCUCGCaCGG-----GCAGaGGCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 59112 | 0.72 | 0.227743 |
|
Target: 5'- uGGAUGCC--GCG-GCCCGa-UCCGGCc -3' miRNA: 3'- -CCUACGGcuCGCaCGGGCagAGGCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 15723 | 0.73 | 0.211267 |
|
Target: 5'- ---cGCCGGGCG-GCUCGUCg-CGGCa -3' miRNA: 3'- ccuaCGGCUCGCaCGGGCAGagGCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 25341 | 0.76 | 0.122523 |
|
Target: 5'- aGGAUacgGCgaCGAGCGUG-CCGUCgUCCGGCg -3' miRNA: 3'- -CCUA---CG--GCUCGCACgGGCAG-AGGCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 16574 | 0.77 | 0.119306 |
|
Target: 5'- cGGAUGCCGAGCaggcgcguGUGCUgGUCgaggCGGCg -3' miRNA: 3'- -CCUACGGCUCG--------CACGGgCAGag--GCCG- -5' |
|||||||
| 23953 | 5' | -60 | NC_005262.1 | + | 12967 | 1.02 | 0.001554 |
|
Target: 5'- gGGAUGCC-AGCGUGCCCGUCUCCGGCg -3' miRNA: 3'- -CCUACGGcUCGCACGGGCAGAGGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home