miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 5' -60 NC_005262.1 + 52386 0.68 0.435878
Target:  5'- cGGcgGCCcGGCGcgGCgCGgCUUCGGCg -3'
miRNA:   3'- -CCuaCGGcUCGCa-CGgGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 42092 0.68 0.435878
Target:  5'- --uUGCCGAucuGCGUGCCCG-CguacagcagCgCGGCg -3'
miRNA:   3'- ccuACGGCU---CGCACGGGCaGa--------G-GCCG- -5'
23953 5' -60 NC_005262.1 + 43233 0.68 0.42676
Target:  5'- ---cGCCGGGC-UGCUCGUCU-UGGCc -3'
miRNA:   3'- ccuaCGGCUCGcACGGGCAGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 6721 0.68 0.42676
Target:  5'- uGAUGCCGGGCccGUGCuuGUCgaacaUCuCGcGCg -3'
miRNA:   3'- cCUACGGCUCG--CACGggCAG-----AG-GC-CG- -5'
23953 5' -60 NC_005262.1 + 12061 0.68 0.408871
Target:  5'- --uUGCCGAGC-UGgUCGaucagCUCCGGCu -3'
miRNA:   3'- ccuACGGCUCGcACgGGCa----GAGGCCG- -5'
23953 5' -60 NC_005262.1 + 33165 0.68 0.400104
Target:  5'- cGGGcaccuUGCCGAGCGUcggcggcgGCUCGaUCUUCGcGCc -3'
miRNA:   3'- -CCU-----ACGGCUCGCA--------CGGGC-AGAGGC-CG- -5'
23953 5' -60 NC_005262.1 + 34738 0.69 0.391457
Target:  5'- ---gGUCGAGCcgaacacgGUGCgCGUCgugCCGGCg -3'
miRNA:   3'- ccuaCGGCUCG--------CACGgGCAGa--GGCCG- -5'
23953 5' -60 NC_005262.1 + 34244 0.69 0.391457
Target:  5'- uGGgcGCCGAGUacaugaacGUGCUCGUCUCUa-- -3'
miRNA:   3'- -CCuaCGGCUCG--------CACGGGCAGAGGccg -5'
23953 5' -60 NC_005262.1 + 47852 0.69 0.372038
Target:  5'- uGAaGCCGAGCGUGUgcagcacuuccuccUCGcUCUgCGGCg -3'
miRNA:   3'- cCUaCGGCUCGCACG--------------GGC-AGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 41593 0.69 0.36626
Target:  5'- --uUGUCGAGCGcgaGCCCGgcgUUCuCGGCu -3'
miRNA:   3'- ccuACGGCUCGCa--CGGGCa--GAG-GCCG- -5'
23953 5' -60 NC_005262.1 + 18076 0.69 0.350094
Target:  5'- gGGAUGCCGAaC-UGCUCGaUCacggCCGGCu -3'
miRNA:   3'- -CCUACGGCUcGcACGGGC-AGa---GGCCG- -5'
23953 5' -60 NC_005262.1 + 17075 0.7 0.342203
Target:  5'- ---cGCCGAuagGCGcGCCCGUCgacgCGGCg -3'
miRNA:   3'- ccuaCGGCU---CGCaCGGGCAGag--GCCG- -5'
23953 5' -60 NC_005262.1 + 19109 0.7 0.334441
Target:  5'- cGAUGCCacguucggaucGGGCGcggGCgCGUCgCCGGCg -3'
miRNA:   3'- cCUACGG-----------CUCGCa--CGgGCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 42247 0.7 0.32681
Target:  5'- cGAUGCCGAGCGccgcGCUCa-CUgCGGCg -3'
miRNA:   3'- cCUACGGCUCGCa---CGGGcaGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 49751 0.7 0.319308
Target:  5'- cGAcGCCG-GCGgcgcccgcGCCCGaggCUCCGGCc -3'
miRNA:   3'- cCUaCGGCuCGCa-------CGGGCa--GAGGCCG- -5'
23953 5' -60 NC_005262.1 + 33702 0.7 0.311935
Target:  5'- cGGcgGCCG-GCGUgucgucGCCCuUCUugCCGGCg -3'
miRNA:   3'- -CCuaCGGCuCGCA------CGGGcAGA--GGCCG- -5'
23953 5' -60 NC_005262.1 + 13717 0.7 0.304693
Target:  5'- cGGGUucgGUCGgcgcAGCG-GCCuuCGUCUCCGGCu -3'
miRNA:   3'- -CCUA---CGGC----UCGCaCGG--GCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 16044 0.7 0.304693
Target:  5'- cGAUGCCGGGUucGCCgCGg--CCGGCg -3'
miRNA:   3'- cCUACGGCUCGcaCGG-GCagaGGCCG- -5'
23953 5' -60 NC_005262.1 + 34006 0.71 0.297581
Target:  5'- aGGuUGCUGGG-GUGCCgCGcCgUCCGGCa -3'
miRNA:   3'- -CCuACGGCUCgCACGG-GCaG-AGGCCG- -5'
23953 5' -60 NC_005262.1 + 26348 0.71 0.290598
Target:  5'- uGAUGCCGGGCGUGCgguUCGagaUCgugCCGcGCa -3'
miRNA:   3'- cCUACGGCUCGCACG---GGC---AGa--GGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.