miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23955 3' -54.1 NC_005262.1 + 34508 0.66 0.832451
Target:  5'- aCGGCGCGGaugcgcuucacGAGCUCGUCGcgGUucGGGa -3'
miRNA:   3'- -GCUGCGUUa----------CUCGAGCAGCa-CG--UCCg -5'
23955 3' -54.1 NC_005262.1 + 34901 0.66 0.832451
Target:  5'- gCGACGCcggacacUGcGUUCGUCGUGCGuccaGCa -3'
miRNA:   3'- -GCUGCGuu-----ACuCGAGCAGCACGUc---CG- -5'
23955 3' -54.1 NC_005262.1 + 46798 0.66 0.832451
Target:  5'- gCGGCGagcCGAUGA-C-CGaCGUGCAGGCc -3'
miRNA:   3'- -GCUGC---GUUACUcGaGCaGCACGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 52162 0.66 0.823438
Target:  5'- cCGGCGCcgccGAGC-CGaUgGUGCAGGg -3'
miRNA:   3'- -GCUGCGuua-CUCGaGC-AgCACGUCCg -5'
23955 3' -54.1 NC_005262.1 + 52562 0.66 0.823438
Target:  5'- -aGCGCGAUcgucgcugucGAGCUCGgcgCGgcucucgaucuUGCAGGUg -3'
miRNA:   3'- gcUGCGUUA----------CUCGAGCa--GC-----------ACGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 61139 0.66 0.823438
Target:  5'- aCGACGCGcUGGcGCagcagaUCG-CGgcgGCGGGCg -3'
miRNA:   3'- -GCUGCGUuACU-CG------AGCaGCa--CGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 5158 0.66 0.822526
Target:  5'- uCGGCGCGcugaucgGUGAcgGCcggCGUCGcgggcGCGGGCg -3'
miRNA:   3'- -GCUGCGU-------UACU--CGa--GCAGCa----CGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 21544 0.66 0.815157
Target:  5'- uCGcCGCAGUGAGCgcggCGcUCGgcaucggaaccgcgaGCGGGUa -3'
miRNA:   3'- -GCuGCGUUACUCGa---GC-AGCa--------------CGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 31839 0.66 0.815157
Target:  5'- gCGA-GCGAUGccuuGCUCGUCGccacaccgccguacaGCAGGUg -3'
miRNA:   3'- -GCUgCGUUACu---CGAGCAGCa--------------CGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 31188 0.66 0.814227
Target:  5'- gCGACGCGAcGAucacGCUCGcCGacaaGuCAGGCa -3'
miRNA:   3'- -GCUGCGUUaCU----CGAGCaGCa---C-GUCCG- -5'
23955 3' -54.1 NC_005262.1 + 42888 0.66 0.814227
Target:  5'- aCGcCGCGAgcuacgggGAGauggugcuaUCGUCGUGC-GGCg -3'
miRNA:   3'- -GCuGCGUUa-------CUCg--------AGCAGCACGuCCG- -5'
23955 3' -54.1 NC_005262.1 + 12104 0.66 0.804826
Target:  5'- gGGCGCAAUcAGCgcCGcCGUGCGcGCg -3'
miRNA:   3'- gCUGCGUUAcUCGa-GCaGCACGUcCG- -5'
23955 3' -54.1 NC_005262.1 + 40523 0.66 0.804826
Target:  5'- -uGCGCGAcaAGUucaUCGUCGcgGCGGGCg -3'
miRNA:   3'- gcUGCGUUacUCG---AGCAGCa-CGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 39326 0.66 0.804826
Target:  5'- -aGCGCGAc--GCUCGUgcCGUGCAGcGCc -3'
miRNA:   3'- gcUGCGUUacuCGAGCA--GCACGUC-CG- -5'
23955 3' -54.1 NC_005262.1 + 36180 0.67 0.789417
Target:  5'- aGGCGCgAGUGcAGCUCGacggccuguucgcugUCGagcggauugGCAGGCu -3'
miRNA:   3'- gCUGCG-UUAC-UCGAGC---------------AGCa--------CGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 38278 0.67 0.789417
Target:  5'- gCGACGCGgaugcugcuguuguuGUGggcgaacaacAGCUCGgccuUCGUGCAguuGGCg -3'
miRNA:   3'- -GCUGCGU---------------UAC----------UCGAGC----AGCACGU---CCG- -5'
23955 3' -54.1 NC_005262.1 + 25724 0.67 0.785498
Target:  5'- aCGAUGCAGgccGAGg-CGaUCGcGCAGGCc -3'
miRNA:   3'- -GCUGCGUUa--CUCgaGC-AGCaCGUCCG- -5'
23955 3' -54.1 NC_005262.1 + 38547 0.67 0.784514
Target:  5'- gCGGCGCAG-GAGCcggCGUUGcGCgcgguucGGGCg -3'
miRNA:   3'- -GCUGCGUUaCUCGa--GCAGCaCG-------UCCG- -5'
23955 3' -54.1 NC_005262.1 + 32759 0.67 0.784514
Target:  5'- gCGACGCGGUGcugaucgccgacaAGCUCGacacCG-GCGGcGCg -3'
miRNA:   3'- -GCUGCGUUAC-------------UCGAGCa---GCaCGUC-CG- -5'
23955 3' -54.1 NC_005262.1 + 17630 0.67 0.775591
Target:  5'- -aGCGC---GAGCUCGcCGagcaGCAGGCa -3'
miRNA:   3'- gcUGCGuuaCUCGAGCaGCa---CGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.