miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23955 5' -59.6 NC_005262.1 + 38856 0.66 0.529537
Target:  5'- -gGCGCGCcgcgcGGcCAUGUgcgcaucccgccaugCCUCGGCGUc -3'
miRNA:   3'- gaCGUGCGa----CCaGUACG---------------GGAGCCGCA- -5'
23955 5' -59.6 NC_005262.1 + 20632 0.66 0.525425
Target:  5'- aUGCACa--GGUaCAgcuUGCCCUCGGUGa -3'
miRNA:   3'- gACGUGcgaCCA-GU---ACGGGAGCCGCa -5'
23955 5' -59.6 NC_005262.1 + 12397 0.66 0.525425
Target:  5'- -aGCACGCggugcacacGGUCAggcgcgGCCUUggcCGGCGUc -3'
miRNA:   3'- gaCGUGCGa--------CCAGUa-----CGGGA---GCCGCA- -5'
23955 5' -59.6 NC_005262.1 + 10111 0.66 0.525425
Target:  5'- uCUGCGCGCccGGcugauagAUGCCCUCGGgCa- -3'
miRNA:   3'- -GACGUGCGa-CCag-----UACGGGAGCC-Gca -5'
23955 5' -59.6 NC_005262.1 + 6046 0.66 0.494999
Target:  5'- uUGCGCGCa----AUGCCCUCGaGCGc -3'
miRNA:   3'- gACGUGCGaccagUACGGGAGC-CGCa -5'
23955 5' -59.6 NC_005262.1 + 14577 0.66 0.494999
Target:  5'- aCUGCGCGCcgccgaGGcC--GCCCUCGGCc- -3'
miRNA:   3'- -GACGUGCGa-----CCaGuaCGGGAGCCGca -5'
23955 5' -59.6 NC_005262.1 + 30509 0.66 0.494999
Target:  5'- -cGCACGagaUGGUCGUcGCcgaCCUgGGCGa -3'
miRNA:   3'- gaCGUGCg--ACCAGUA-CG---GGAgCCGCa -5'
23955 5' -59.6 NC_005262.1 + 56706 0.66 0.485034
Target:  5'- gUGCGCucGCUGGaggaCGUGUCCgaggcgUCGGCGUu -3'
miRNA:   3'- gACGUG--CGACCa---GUACGGG------AGCCGCA- -5'
23955 5' -59.6 NC_005262.1 + 57562 0.67 0.465399
Target:  5'- gUGCGCGCggcgGGcuUCA-GCaUCUCGGCGg -3'
miRNA:   3'- gACGUGCGa---CC--AGUaCG-GGAGCCGCa -5'
23955 5' -59.6 NC_005262.1 + 18726 0.67 0.455737
Target:  5'- cCUGCGCGC-GcGUgAUGCCCuggaaUCGGCc- -3'
miRNA:   3'- -GACGUGCGaC-CAgUACGGG-----AGCCGca -5'
23955 5' -59.6 NC_005262.1 + 28931 0.67 0.453817
Target:  5'- -aGCGCGCcccacagaugagGGUCAUGUgCUCGcGCGc -3'
miRNA:   3'- gaCGUGCGa-----------CCAGUACGgGAGC-CGCa -5'
23955 5' -59.6 NC_005262.1 + 58700 0.67 0.446184
Target:  5'- -cGCAacaaGCUGGcggCAUGCCCgaGGCGc -3'
miRNA:   3'- gaCGUg---CGACCa--GUACGGGagCCGCa -5'
23955 5' -59.6 NC_005262.1 + 11665 0.67 0.427421
Target:  5'- gCUGCACGCUGG-CcgGCagagCUUCGcGCGc -3'
miRNA:   3'- -GACGUGCGACCaGuaCG----GGAGC-CGCa -5'
23955 5' -59.6 NC_005262.1 + 15360 0.67 0.426495
Target:  5'- -cGCGCGCgUGGUCAUGCCgccguccgucgugUUCGGg-- -3'
miRNA:   3'- gaCGUGCG-ACCAGUACGG-------------GAGCCgca -5'
23955 5' -59.6 NC_005262.1 + 11569 0.67 0.418216
Target:  5'- -cGCGCGCUGc-UAUGCCggCGGCGg -3'
miRNA:   3'- gaCGUGCGACcaGUACGGgaGCCGCa -5'
23955 5' -59.6 NC_005262.1 + 14472 0.67 0.418216
Target:  5'- cCUGCuCGUcGGUCAUGCCCU--GCGc -3'
miRNA:   3'- -GACGuGCGaCCAGUACGGGAgcCGCa -5'
23955 5' -59.6 NC_005262.1 + 15833 0.67 0.418216
Target:  5'- -gGCGCGagaGGUCGUucgcGCCUUCGGUGa -3'
miRNA:   3'- gaCGUGCga-CCAGUA----CGGGAGCCGCa -5'
23955 5' -59.6 NC_005262.1 + 33398 0.68 0.409132
Target:  5'- -cGCACGC-GGcUCGUGCUguaCUCGGgGUg -3'
miRNA:   3'- gaCGUGCGaCC-AGUACGG---GAGCCgCA- -5'
23955 5' -59.6 NC_005262.1 + 46144 0.68 0.373209
Target:  5'- -gGCGCGCUGG-CGggcgaucucugccUGCUgCUCGGCGa -3'
miRNA:   3'- gaCGUGCGACCaGU-------------ACGG-GAGCCGCa -5'
23955 5' -59.6 NC_005262.1 + 48227 0.69 0.323861
Target:  5'- -gGCAUGCaGGUCAUGCCCgacacguacaaGGCa- -3'
miRNA:   3'- gaCGUGCGaCCAGUACGGGag---------CCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.