Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 3' | -55.2 | NC_005262.1 | + | 34465 | 0.66 | 0.76223 |
Target: 5'- -cUCGGGCGUCGGUUCgUccUGAucCGGGu -3' miRNA: 3'- acAGCCCGUAGUCGGGgA--ACUu-GUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 14728 | 0.66 | 0.731277 |
Target: 5'- cUGcUCGGGCAgcgauugaagCAGCCCgCUcGAAUAGc -3' miRNA: 3'- -AC-AGCCCGUa---------GUCGGG-GAaCUUGUCc -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 20493 | 0.66 | 0.752028 |
Target: 5'- -cUCGGGCGucaUCAGCaccgagCCCUcGAuCAGGa -3' miRNA: 3'- acAGCCCGU---AGUCG------GGGAaCUuGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 17360 | 0.66 | 0.7723 |
Target: 5'- cGgcgCGGGCGgcgCggcgGGCCCCUgcgGAccuuGCGGGc -3' miRNA: 3'- aCa--GCCCGUa--G----UCGGGGAa--CU----UGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 12892 | 0.66 | 0.76223 |
Target: 5'- -cUCGuGcGCAUCAGCCCCggccugcUGGACGa- -3' miRNA: 3'- acAGC-C-CGUAGUCGGGGa------ACUUGUcc -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 21267 | 0.66 | 0.731277 |
Target: 5'- aG-CGGGCuUCAGCgCCaaGAcugcGCAGGa -3' miRNA: 3'- aCaGCCCGuAGUCGgGGaaCU----UGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 36979 | 0.67 | 0.667032 |
Target: 5'- -aUCGGGUAUCgacccgAGCCCCaaGAACGucGGc -3' miRNA: 3'- acAGCCCGUAG------UCGGGGaaCUUGU--CC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 56345 | 0.67 | 0.667032 |
Target: 5'- gGUCgaGGGCggCGuGCCCCgcGAGCAGa -3' miRNA: 3'- aCAG--CCCGuaGU-CGGGGaaCUUGUCc -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 56218 | 0.67 | 0.720749 |
Target: 5'- uUGUCGGGaaagaCGGCUCCgUGAcgcugcACGGGa -3' miRNA: 3'- -ACAGCCCgua--GUCGGGGaACU------UGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 284 | 0.68 | 0.656149 |
Target: 5'- -cUCGcGGCucCGGCUCCUUGcGACAGGc -3' miRNA: 3'- acAGC-CCGuaGUCGGGGAAC-UUGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 36448 | 0.68 | 0.612499 |
Target: 5'- gGUCGGGUucUCGGgCaUCUUGAugAGGu -3' miRNA: 3'- aCAGCCCGu-AGUCgG-GGAACUugUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 37461 | 0.68 | 0.612499 |
Target: 5'- cGcCcGGCAUCAGCUCCUcGAGCAu- -3' miRNA: 3'- aCaGcCCGUAGUCGGGGAaCUUGUcc -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 46409 | 0.69 | 0.569112 |
Target: 5'- cGUCGGGC-UgGGCCCgCaaGGuccGCAGGg -3' miRNA: 3'- aCAGCCCGuAgUCGGG-GaaCU---UGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 950 | 0.69 | 0.601605 |
Target: 5'- uUGUCGaGGauugcgucaucCGUCAGCCCCUgccGAguggcgaccuGCGGGg -3' miRNA: 3'- -ACAGC-CC-----------GUAGUCGGGGAa--CU----------UGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 32709 | 0.7 | 0.505677 |
Target: 5'- uUGUCGGGCcgCGGCucgCCCUU---CAGGu -3' miRNA: 3'- -ACAGCCCGuaGUCG---GGGAAcuuGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 17160 | 0.71 | 0.485191 |
Target: 5'- cUGUCGGcCAUCAGCgugCCCUUcaucgcgucGGGCGGGa -3' miRNA: 3'- -ACAGCCcGUAGUCG---GGGAA---------CUUGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 4589 | 0.76 | 0.220671 |
Target: 5'- cUGcUCGGGCGUgAGCgCCCgcagGAACGGGc -3' miRNA: 3'- -AC-AGCCCGUAgUCG-GGGaa--CUUGUCC- -5' |
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23956 | 3' | -55.2 | NC_005262.1 | + | 10797 | 1.1 | 0.00109 |
Target: 5'- cUGUCGGGCAUCAGCCCCUUGAACAGGc -3' miRNA: 3'- -ACAGCCCGUAGUCGGGGAACUUGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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