miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 31913 0.66 0.423872
Target:  5'- aCCC-GCUCGAcGCGCCggacGUCGCCa- -3'
miRNA:   3'- cGGGcCGAGCU-CGUGGaa--CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 49849 0.66 0.429255
Target:  5'- gGCCCGGUgccggCGgcGGUACCggaagcagcucaGCCGgCCGGa -3'
miRNA:   3'- -CGGGCCGa----GC--UCGUGGaa----------CGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 33336 0.66 0.432866
Target:  5'- uGCgUcGCUgCGcGGCACCgUGCCGCCGa -3'
miRNA:   3'- -CGgGcCGA-GC-UCGUGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 41034 0.66 0.441056
Target:  5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3'
miRNA:   3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49731 0.66 0.441971
Target:  5'- -aCCGGCggcCGAagccGCACCgacGCCGgCGGc -3'
miRNA:   3'- cgGGCCGa--GCU----CGUGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 51548 0.66 0.441971
Target:  5'- -aCCGGCUCGcGUACCacgugGUCGCgcgCGGa -3'
miRNA:   3'- cgGGCCGAGCuCGUGGaa---CGGCG---GCC- -5'
23956 5' -61.9 NC_005262.1 + 23250 0.66 0.451183
Target:  5'- uGCCCGGCgcguaaGAGcCGCCc-GCCGCg-- -3'
miRNA:   3'- -CGGGCCGag----CUC-GUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 20121 0.66 0.451183
Target:  5'- gGCCCGGCUUGGcUugCguucagGUCGCCa- -3'
miRNA:   3'- -CGGGCCGAGCUcGugGaa----CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 13471 0.66 0.451183
Target:  5'- cGUCCuGCgcggCGGGCGC--UGCgGCCGGc -3'
miRNA:   3'- -CGGGcCGa---GCUCGUGgaACGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 13019 0.66 0.451183
Target:  5'- cUUCGGCUUGAucucgaaccGCACCUUGcCCGUCu- -3'
miRNA:   3'- cGGGCCGAGCU---------CGUGGAAC-GGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 32674 0.67 0.389044
Target:  5'- cGCuUCGaGUUCGcGCugCcgGCCGCCGGc -3'
miRNA:   3'- -CG-GGC-CGAGCuCGugGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 45224 0.67 0.389044
Target:  5'- cGCCgGGCUCG---GCCUgaaCGCCGGc -3'
miRNA:   3'- -CGGgCCGAGCucgUGGAacgGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18085 0.67 0.389044
Target:  5'- -aCUGGCUCGAaUGCCUcgaaGCgGCCGGc -3'
miRNA:   3'- cgGGCCGAGCUcGUGGAa---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 50035 0.67 0.389044
Target:  5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 20579 0.67 0.389044
Target:  5'- aGCCCGGC--GAGCAgCgcgcgGCgCGCCGc -3'
miRNA:   3'- -CGGGCCGagCUCGUgGaa---CG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 41687 0.67 0.380635
Target:  5'- nGCaCCGGCaUCG-GCAUCUaUGCCGCa-- -3'
miRNA:   3'- -CG-GGCCG-AGCuCGUGGA-ACGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 29643 0.67 0.372348
Target:  5'- gGCaUCGGCagCGAGCGgCaUGCCGCCc- -3'
miRNA:   3'- -CG-GGCCGa-GCUCGUgGaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 51858 0.67 0.394148
Target:  5'- aGCgCGGCgccgcgaacgacgCGAGCacgaccgaGCCgaGCCGCCGa -3'
miRNA:   3'- -CGgGCCGa------------GCUCG--------UGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 11627 0.67 0.397575
Target:  5'- uGCCCccugcaccaucGGCUCGgcGGCGCCggcgucgcgcUGCaCGCUGGc -3'
miRNA:   3'- -CGGG-----------CCGAGC--UCGUGGa---------ACG-GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 34466 0.67 0.406223
Target:  5'- uGCCCGGagccuacggcgUUCGAGCACau--CCGCgCGGc -3'
miRNA:   3'- -CGGGCC-----------GAGCUCGUGgaacGGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.