Results 61 - 80 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 46230 | 0.68 | 0.356147 |
Target: 5'- cCUCGGCUuCGcGCGCCgccgcgGCUGCCGc -3' miRNA: 3'- cGGGCCGA-GCuCGUGGaa----CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 33204 | 0.68 | 0.356147 |
Target: 5'- cGCCCuucagcGGCUUG-GCGgucuugccguCCUUGCUGCCGu -3' miRNA: 3'- -CGGG------CCGAGCuCGU----------GGAACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 24577 | 0.68 | 0.356147 |
Target: 5'- uCCCGGC-CGc-CugCUUGCUGgCCGGa -3' miRNA: 3'- cGGGCCGaGCucGugGAACGGC-GGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 18639 | 0.68 | 0.310572 |
Target: 5'- cGUCCGcacgcaGCgCGAGCGCCUUGUCGCg-- -3' miRNA: 3'- -CGGGC------CGaGCUCGUGGAACGGCGgcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 22212 | 0.68 | 0.309851 |
Target: 5'- gGCUCGcGCUCGAcaagcucacggccGCGCCgcccacGCCGgCCGGc -3' miRNA: 3'- -CGGGC-CGAGCU-------------CGUGGaa----CGGC-GGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 43056 | 0.68 | 0.332787 |
Target: 5'- aCCCGGC-CG-GCACCgcgcGCCGCgGc -3' miRNA: 3'- cGGGCCGaGCuCGUGGaa--CGGCGgCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 36622 | 0.68 | 0.340447 |
Target: 5'- aUgCGGUUCGguugcuggauGGCGCCaUGuCCGCCGGc -3' miRNA: 3'- cGgGCCGAGC----------UCGUGGaAC-GGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 50777 | 0.68 | 0.348234 |
Target: 5'- gGUgCGGUUCGAGaucaaGCCgaagGUCGCCGa -3' miRNA: 3'- -CGgGCCGAGCUCg----UGGaa--CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 40320 | 0.68 | 0.324508 |
Target: 5'- cCCCGGCgaccgcuUCGAGCAUCg-GCUcacgGCCGGc -3' miRNA: 3'- cGGGCCG-------AGCUCGUGGaaCGG----CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 51248 | 0.68 | 0.317849 |
Target: 5'- cGCgCCGGCUaCGguaaggacggcaAGCugaACCUcaccgGCCGCCGGc -3' miRNA: 3'- -CG-GGCCGA-GC------------UCG---UGGAa----CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 52681 | 0.68 | 0.310572 |
Target: 5'- aGUCCGGgUCGuuGCACCaUUGCC-CCGc -3' miRNA: 3'- -CGGGCCgAGCu-CGUGG-AACGGcGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 37996 | 0.68 | 0.317849 |
Target: 5'- aUCCGGUacUCGGGCGCC-UGCCaccaCGGg -3' miRNA: 3'- cGGGCCG--AGCUCGUGGaACGGcg--GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 57665 | 0.68 | 0.325254 |
Target: 5'- uCCCGGCcgcgcacaUCGAgGCgACUgUGCCGCCGu -3' miRNA: 3'- cGGGCCG--------AGCU-CG-UGGaACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 37751 | 0.68 | 0.332787 |
Target: 5'- cGCCCcuGCUUGcGCGCCgcggcgaGCUGCUGGg -3' miRNA: 3'- -CGGGc-CGAGCuCGUGGaa-----CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 39028 | 0.68 | 0.337368 |
Target: 5'- cGCCCGGCUCGccgcGGUGCUgaauccacuucgGCCGCaCGc -3' miRNA: 3'- -CGGGCCGAGC----UCGUGGaa----------CGGCG-GCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 4415 | 0.68 | 0.310572 |
Target: 5'- cGCCUGcuGCgCGAGCGCCUggagcucggcGuuGCCGGc -3' miRNA: 3'- -CGGGC--CGaGCUCGUGGAa---------CggCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 54859 | 0.68 | 0.339675 |
Target: 5'- cGCCCGcGCgagggucaaauaaUCGGGCGCUUUcGCCGCgcacccaagagCGGa -3' miRNA: 3'- -CGGGC-CG-------------AGCUCGUGGAA-CGGCG-----------GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 60046 | 0.68 | 0.340447 |
Target: 5'- ---gGGCUCGAuCGCCUgaGCCGCgCGGa -3' miRNA: 3'- cgggCCGAGCUcGUGGAa-CGGCG-GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 5177 | 0.68 | 0.317849 |
Target: 5'- cGgCCGGCgucgCGGGCGCgggcGCgGCCGGc -3' miRNA: 3'- -CgGGCCGa---GCUCGUGgaa-CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 60501 | 0.68 | 0.348234 |
Target: 5'- cGCCgGGCcgCGcGGCGCag-GCCGCCa- -3' miRNA: 3'- -CGGgCCGa-GC-UCGUGgaaCGGCGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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