miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 59221 0.67 0.364185
Target:  5'- cGCCCGaGC---AGCGCC--GCCGCUGGc -3'
miRNA:   3'- -CGGGC-CGagcUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 10073 0.67 0.364185
Target:  5'- -gUCGcGUUCGAGCGCCacgGCCuucgacgcgGCCGGg -3'
miRNA:   3'- cgGGC-CGAGCUCGUGGaa-CGG---------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 20442 0.67 0.364185
Target:  5'- uGCaCGGUUCcGGCACCgucGCCGCgUGGg -3'
miRNA:   3'- -CGgGCCGAGcUCGUGGaa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 55792 0.67 0.372348
Target:  5'- -gCgGGCuUCGAGCAgaacGCCGCCGGc -3'
miRNA:   3'- cgGgCCG-AGCUCGUggaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51858 0.67 0.394148
Target:  5'- aGCgCGGCgccgcgaacgacgCGAGCacgaccgaGCCgaGCCGCCGa -3'
miRNA:   3'- -CGgGCCGa------------GCUCG--------UGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 48342 0.67 0.397575
Target:  5'- aGCUCGGCaCGAccgacccggcGCugCUgGCgGCCGGc -3'
miRNA:   3'- -CGGGCCGaGCU----------CGugGAaCGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 34466 0.67 0.406223
Target:  5'- uGCCCGGagccuacggcgUUCGAGCACau--CCGCgCGGc -3'
miRNA:   3'- -CGGGCC-----------GAGCUCGUGgaacGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 11627 0.67 0.397575
Target:  5'- uGCCCccugcaccaucGGCUCGgcGGCGCCggcgucgcgcUGCaCGCUGGc -3'
miRNA:   3'- -CGGG-----------CCGAGC--UCGUGGa---------ACG-GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 30633 0.67 0.372348
Target:  5'- uGCCCGGCaucUCGAcgACggUGCCGCCc- -3'
miRNA:   3'- -CGGGCCG---AGCUcgUGgaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 50035 0.67 0.389044
Target:  5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 31888 0.67 0.40102
Target:  5'- cGUCCGGCgcgUCGAGCGggUUGCCcgcguagcccgugaaGUCGGg -3'
miRNA:   3'- -CGGGCCG---AGCUCGUggAACGG---------------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6605 0.67 0.40102
Target:  5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3'
miRNA:   3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6858 0.67 0.395003
Target:  5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3'
miRNA:   3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 8387 0.67 0.389044
Target:  5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3'
miRNA:   3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5'
23956 5' -61.9 NC_005262.1 + 14094 0.67 0.388198
Target:  5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3'
miRNA:   3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 55560 0.67 0.387353
Target:  5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3'
miRNA:   3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 3244 0.67 0.380635
Target:  5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3'
miRNA:   3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5'
23956 5' -61.9 NC_005262.1 + 15151 0.67 0.380635
Target:  5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3'
miRNA:   3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12599 0.67 0.372348
Target:  5'- cGCCCGcGCggcuccagCGGGcCGCCgcGUCGUCGGc -3'
miRNA:   3'- -CGGGC-CGa-------GCUC-GUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 46924 0.67 0.372348
Target:  5'- gGCCCGGCgcgcggcCGGGCGCCU-GCaucaGuuGa -3'
miRNA:   3'- -CGGGCCGa------GCUCGUGGAaCGg---CggCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.