Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 15151 | 0.67 | 0.380635 |
Target: 5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3' miRNA: 3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3244 | 0.67 | 0.380635 |
Target: 5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3' miRNA: 3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 55560 | 0.67 | 0.387353 |
Target: 5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3' miRNA: 3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 34466 | 0.67 | 0.406223 |
Target: 5'- uGCCCGGagccuacggcgUUCGAGCACau--CCGCgCGGc -3' miRNA: 3'- -CGGGCC-----------GAGCUCGUGgaacGGCG-GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 14094 | 0.67 | 0.388198 |
Target: 5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3' miRNA: 3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 8387 | 0.67 | 0.389044 |
Target: 5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3' miRNA: 3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2698 | 0.67 | 0.403617 |
Target: 5'- cGCCCGGUacaucuucagguuaUCGGGCugcGCCUUcGUCGaCGGc -3' miRNA: 3'- -CGGGCCG--------------AGCUCG---UGGAA-CGGCgGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 31888 | 0.67 | 0.40102 |
Target: 5'- cGUCCGGCgcgUCGAGCGggUUGCCcgcguagcccgugaaGUCGGg -3' miRNA: 3'- -CGGGCCG---AGCUCGUggAACGG---------------CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6858 | 0.67 | 0.395003 |
Target: 5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3' miRNA: 3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6605 | 0.67 | 0.40102 |
Target: 5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3' miRNA: 3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 20121 | 0.66 | 0.451183 |
Target: 5'- gGCCCGGCUUGGcUugCguucagGUCGCCa- -3' miRNA: 3'- -CGGGCCGAGCUcGugGaa----CGGCGGcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 49763 | 0.66 | 0.451183 |
Target: 5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3' miRNA: 3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 59694 | 0.66 | 0.451183 |
Target: 5'- -aUCGGCgugccgccacgCGGGCGCUacGUCGCCGGc -3' miRNA: 3'- cgGGCCGa----------GCUCGUGGaaCGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 60767 | 0.66 | 0.460499 |
Target: 5'- gGCgCCGGCUCaa-CGgCUU-CCGCCGGa -3' miRNA: 3'- -CG-GGCCGAGcucGUgGAAcGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 32896 | 0.66 | 0.460499 |
Target: 5'- uGCCaucCUCGAGCgcgagcggcgucACCauccgGCCGCCGGc -3' miRNA: 3'- -CGGgccGAGCUCG------------UGGaa---CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2516 | 0.66 | 0.459563 |
Target: 5'- aGgCUGGCcgcgccgaUCGAGUcugucacgaacugGCCcagGCCGCCGGu -3' miRNA: 3'- -CgGGCCG--------AGCUCG-------------UGGaa-CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 11461 | 0.66 | 0.451183 |
Target: 5'- aUCCGGCgauacgCGuccGGCGCCUUGUU-CCGGa -3' miRNA: 3'- cGGGCCGa-----GC---UCGUGGAACGGcGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 19117 | 0.66 | 0.451183 |
Target: 5'- cGUUCGGaUCGGGCGCgggcgcGUCGCCGGc -3' miRNA: 3'- -CGGGCCgAGCUCGUGgaa---CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 13471 | 0.66 | 0.451183 |
Target: 5'- cGUCCuGCgcggCGGGCGC--UGCgGCCGGc -3' miRNA: 3'- -CGGGcCGa---GCUCGUGgaACGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 13019 | 0.66 | 0.451183 |
Target: 5'- cUUCGGCUUGAucucgaaccGCACCUUGcCCGUCu- -3' miRNA: 3'- cGGGCCGAGCU---------CGUGGAAC-GGCGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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