miRNA display CGI


Results 121 - 140 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 41034 0.66 0.441056
Target:  5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3'
miRNA:   3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49763 0.66 0.451183
Target:  5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51548 0.66 0.441971
Target:  5'- -aCCGGCUCGcGUACCacgugGUCGCgcgCGGa -3'
miRNA:   3'- cgGGCCGAGCuCGUGGaa---CGGCG---GCC- -5'
23956 5' -61.9 NC_005262.1 + 12727 0.66 0.451183
Target:  5'- uCCUGcGCggCGAGCACCUgauggUGCcCGUCGa -3'
miRNA:   3'- cGGGC-CGa-GCUCGUGGA-----ACG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 46028 0.66 0.450257
Target:  5'- cGCUCGGCcucgaauUCGAGCAgCgUGUCGuCCGc -3'
miRNA:   3'- -CGGGCCG-------AGCUCGUgGaACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 46395 0.66 0.441971
Target:  5'- cGCCCaGCgucUCG-GCAUUgucgGCCGCCGa -3'
miRNA:   3'- -CGGGcCG---AGCuCGUGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 49849 0.66 0.429255
Target:  5'- gGCCCGGUgccggCGgcGGUACCggaagcagcucaGCCGgCCGGa -3'
miRNA:   3'- -CGGGCCGa----GC--UCGUGGaa----------CGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 31913 0.66 0.423872
Target:  5'- aCCC-GCUCGAcGCGCCggacGUCGCCa- -3'
miRNA:   3'- cGGGcCGAGCU-CGUGGaa--CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 12243 0.66 0.423872
Target:  5'- aGCaugCGGUcgcgucgauggUCGGGCACCUgucgaucGCgGCCGGc -3'
miRNA:   3'- -CGg--GCCG-----------AGCUCGUGGAa------CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6729 0.66 0.420306
Target:  5'- gGCCCGuGCUUGucgaacaucucgcGCGCCUcguugUGCUcgugGCCGGg -3'
miRNA:   3'- -CGGGC-CGAGCu------------CGUGGA-----ACGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51222 0.66 0.41147
Target:  5'- cGCCggCGGCagcagcagcucgaCGAGCGCCgccgcgaccUGCCGCCGc -3'
miRNA:   3'- -CGG--GCCGa------------GCUCGUGGa--------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 16459 0.66 0.41499
Target:  5'- uUCUGGCgcugcgucUCGAGCGCCgaaucgGUCGCCa- -3'
miRNA:   3'- cGGGCCG--------AGCUCGUGGaa----CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 46139 0.66 0.422979
Target:  5'- aGCUCGGCgcgcuggCGGGCgaucucuGCC-UGCUGCuCGGc -3'
miRNA:   3'- -CGGGCCGa------GCUCG-------UGGaACGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 33336 0.66 0.432866
Target:  5'- uGCgUcGCUgCGcGGCACCgUGCCGCCGa -3'
miRNA:   3'- -CGgGcCGA-GC-UCGUGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 17536 0.66 0.431962
Target:  5'- uGCCCuGCaUGAGC-CCUUGCgcgaacgCGCCGa -3'
miRNA:   3'- -CGGGcCGaGCUCGuGGAACG-------GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 20288 0.66 0.432866
Target:  5'- uGCUaaCGGUUgCGAcCGCCUUGCCGuCCGc -3'
miRNA:   3'- -CGG--GCCGA-GCUcGUGGAACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 28214 0.66 0.432866
Target:  5'- aGCCCGcGC-CGAGCACaacaUUcGCgcucuuucccgCGCCGGc -3'
miRNA:   3'- -CGGGC-CGaGCUCGUGg---AA-CG-----------GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 23461 0.66 0.441971
Target:  5'- cGCgCCGGCcgUGAGCcgauGCUcgaagcgGUCGCCGGg -3'
miRNA:   3'- -CG-GGCCGa-GCUCG----UGGaa-----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 20713 0.66 0.422979
Target:  5'- uGCCCGGUcaggUCGAugaugaagcugccGCGgCgcgcggUGCCGgCCGGg -3'
miRNA:   3'- -CGGGCCG----AGCU-------------CGUgGa-----ACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 59694 0.66 0.451183
Target:  5'- -aUCGGCgugccgccacgCGGGCGCUacGUCGCCGGc -3'
miRNA:   3'- cgGGCCGa----------GCUCGUGGaaCGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.