Results 41 - 60 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 63303 | 0.69 | 0.269572 |
Target: 5'- gGCUCGGCgUCGAcguggaacacgcGCGCCgcGUCGCCGa -3' miRNA: 3'- -CGGGCCG-AGCU------------CGUGGaaCGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 50600 | 0.69 | 0.269572 |
Target: 5'- aCCCGGUagcgCGAGCGCUUcggcugaaccUGuuGCUGGa -3' miRNA: 3'- cGGGCCGa---GCUCGUGGA----------ACggCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 46537 | 0.69 | 0.269572 |
Target: 5'- aGCCCaGCgCG-GCGCCg-GCCGCCGc -3' miRNA: 3'- -CGGGcCGaGCuCGUGGaaCGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 18401 | 0.69 | 0.274122 |
Target: 5'- cGCaCCGGCUucCGAGCGCCUcaaugagcgcgacuUGCCuuuccaucugGUCGGc -3' miRNA: 3'- -CG-GGCCGA--GCUCGUGGA--------------ACGG----------CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 35378 | 0.69 | 0.27609 |
Target: 5'- gGCCCGauucgacCUCGAGCACg-UGCCGCuCGu -3' miRNA: 3'- -CGGGCc------GAGCUCGUGgaACGGCG-GCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 47715 | 0.69 | 0.27609 |
Target: 5'- cGCCgggcggCGGCUCGccgccuGUAUCUggugcGCCGCCGGc -3' miRNA: 3'- -CGG------GCCGAGCu-----CGUGGAa----CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2977 | 0.69 | 0.27609 |
Target: 5'- uGCCCGGCaUCGGGCAaug-GCCuCCGu -3' miRNA: 3'- -CGGGCCG-AGCUCGUggaaCGGcGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 21562 | 0.69 | 0.278733 |
Target: 5'- cGCUCGGCaucggaaccgcgagCGGGUACgUcgUGCCGCCGa -3' miRNA: 3'- -CGGGCCGa-------------GCUCGUGgA--ACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 47078 | 0.69 | 0.282064 |
Target: 5'- uGCCCGGUgcgcacagggguaUCGAGCACCUgcgugacgaUGCacuccuCGcCCGGc -3' miRNA: 3'- -CGGGCCG-------------AGCUCGUGGA---------ACG------GC-GGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 46084 | 0.69 | 0.282734 |
Target: 5'- uUCCGGCUCGGGCucguUCggGCCagcgaccacgGCCGGc -3' miRNA: 3'- cGGGCCGAGCUCGu---GGaaCGG----------CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 7798 | 0.69 | 0.28882 |
Target: 5'- uGCgCuGCUCGAGCGCCUucugguaUGCCuuguaGCCGa -3' miRNA: 3'- -CGgGcCGAGCUCGUGGA-------ACGG-----CGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 52676 | 0.69 | 0.28882 |
Target: 5'- aGCuuGugaagcaGCUCGAGCAggaagGCCGCCGGc -3' miRNA: 3'- -CGggC-------CGAGCUCGUggaa-CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 11394 | 0.69 | 0.292246 |
Target: 5'- cGCgCGGCUCcAcgccgaagccgcgccGCGCCggGCCGCCGa -3' miRNA: 3'- -CGgGCCGAGcU---------------CGUGGaaCGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2658 | 0.69 | 0.296399 |
Target: 5'- uGCgCGGCgcCGGGCGgcguCCUgGCCGCCGu -3' miRNA: 3'- -CGgGCCGa-GCUCGU----GGAaCGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 41647 | 0.69 | 0.296399 |
Target: 5'- aGCUCGGCgaugCGGGCAgCCgcgGCgGCCa- -3' miRNA: 3'- -CGGGCCGa---GCUCGU-GGaa-CGgCGGcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 13584 | 0.69 | 0.296399 |
Target: 5'- cGUUCGGUcgUGAGCAUCUUcguccaGCCGCCGu -3' miRNA: 3'- -CGGGCCGa-GCUCGUGGAA------CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 28409 | 0.69 | 0.302714 |
Target: 5'- cGCgCGGUaUUGAGCGCCgcgUGCgccagcauauuucCGCCGGu -3' miRNA: 3'- -CGgGCCG-AGCUCGUGGa--ACG-------------GCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 47199 | 0.69 | 0.302714 |
Target: 5'- uGCUCgaaauggGGCUCGcGGCACUgucGCCGCCGc -3' miRNA: 3'- -CGGG-------CCGAGC-UCGUGGaa-CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 36127 | 0.69 | 0.303422 |
Target: 5'- uCUCGGCcCGAuUAUCUUGCUGUCGGg -3' miRNA: 3'- cGGGCCGaGCUcGUGGAACGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 22212 | 0.68 | 0.309851 |
Target: 5'- gGCUCGcGCUCGAcaagcucacggccGCGCCgcccacGCCGgCCGGc -3' miRNA: 3'- -CGGGC-CGAGCU-------------CGUGGaa----CGGC-GGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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