Results 81 - 100 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 10073 | 0.67 | 0.364185 |
Target: 5'- -gUCGcGUUCGAGCGCCacgGCCuucgacgcgGCCGGg -3' miRNA: 3'- cgGGC-CGAGCUCGUGGaa-CGG---------CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 59221 | 0.67 | 0.364185 |
Target: 5'- cGCCCGaGC---AGCGCC--GCCGCUGGc -3' miRNA: 3'- -CGGGC-CGagcUCGUGGaaCGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 20442 | 0.67 | 0.364185 |
Target: 5'- uGCaCGGUUCcGGCACCgucGCCGCgUGGg -3' miRNA: 3'- -CGgGCCGAGcUCGUGGaa-CGGCG-GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 46924 | 0.67 | 0.372348 |
Target: 5'- gGCCCGGCgcgcggcCGGGCGCCU-GCaucaGuuGa -3' miRNA: 3'- -CGGGCCGa------GCUCGUGGAaCGg---CggCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 16036 | 0.67 | 0.372348 |
Target: 5'- aGCCCGcGCgaugcCGGGUucGCCgcgGCCGgCGGc -3' miRNA: 3'- -CGGGC-CGa----GCUCG--UGGaa-CGGCgGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 30633 | 0.67 | 0.372348 |
Target: 5'- uGCCCGGCaucUCGAcgACggUGCCGCCc- -3' miRNA: 3'- -CGGGCCG---AGCUcgUGgaACGGCGGcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 12599 | 0.67 | 0.372348 |
Target: 5'- cGCCCGcGCggcuccagCGGGcCGCCgcGUCGUCGGc -3' miRNA: 3'- -CGGGC-CGa-------GCUC-GUGGaaCGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 29643 | 0.67 | 0.372348 |
Target: 5'- gGCaUCGGCagCGAGCGgCaUGCCGCCc- -3' miRNA: 3'- -CG-GGCCGa-GCUCGUgGaACGGCGGcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 55792 | 0.67 | 0.372348 |
Target: 5'- -gCgGGCuUCGAGCAgaacGCCGCCGGc -3' miRNA: 3'- cgGgCCG-AGCUCGUggaaCGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 41687 | 0.67 | 0.380635 |
Target: 5'- nGCaCCGGCaUCG-GCAUCUaUGCCGCa-- -3' miRNA: 3'- -CG-GGCCG-AGCuCGUGGA-ACGGCGgcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3244 | 0.67 | 0.380635 |
Target: 5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3' miRNA: 3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 15151 | 0.67 | 0.380635 |
Target: 5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3' miRNA: 3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 55560 | 0.67 | 0.387353 |
Target: 5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3' miRNA: 3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 14094 | 0.67 | 0.388198 |
Target: 5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3' miRNA: 3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 32674 | 0.67 | 0.389044 |
Target: 5'- cGCuUCGaGUUCGcGCugCcgGCCGCCGGc -3' miRNA: 3'- -CG-GGC-CGAGCuCGugGaaCGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 20579 | 0.67 | 0.389044 |
Target: 5'- aGCCCGGC--GAGCAgCgcgcgGCgCGCCGc -3' miRNA: 3'- -CGGGCCGagCUCGUgGaa---CG-GCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 45224 | 0.67 | 0.389044 |
Target: 5'- cGCCgGGCUCG---GCCUgaaCGCCGGc -3' miRNA: 3'- -CGGgCCGAGCucgUGGAacgGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 18085 | 0.67 | 0.389044 |
Target: 5'- -aCUGGCUCGAaUGCCUcgaaGCgGCCGGc -3' miRNA: 3'- cgGGCCGAGCUcGUGGAa---CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 8387 | 0.67 | 0.389044 |
Target: 5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3' miRNA: 3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 50035 | 0.67 | 0.389044 |
Target: 5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3' miRNA: 3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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