miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 46230 0.68 0.356147
Target:  5'- cCUCGGCUuCGcGCGCCgccgcgGCUGCCGc -3'
miRNA:   3'- cGGGCCGA-GCuCGUGGaa----CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 33204 0.68 0.356147
Target:  5'- cGCCCuucagcGGCUUG-GCGgucuugccguCCUUGCUGCCGu -3'
miRNA:   3'- -CGGG------CCGAGCuCGU----------GGAACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 24577 0.68 0.356147
Target:  5'- uCCCGGC-CGc-CugCUUGCUGgCCGGa -3'
miRNA:   3'- cGGGCCGaGCucGugGAACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 50777 0.68 0.348234
Target:  5'- gGUgCGGUUCGAGaucaaGCCgaagGUCGCCGa -3'
miRNA:   3'- -CGgGCCGAGCUCg----UGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 60501 0.68 0.348234
Target:  5'- cGCCgGGCcgCGcGGCGCag-GCCGCCa- -3'
miRNA:   3'- -CGGgCCGa-GC-UCGUGgaaCGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 60046 0.68 0.340447
Target:  5'- ---gGGCUCGAuCGCCUgaGCCGCgCGGa -3'
miRNA:   3'- cgggCCGAGCUcGUGGAa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 36622 0.68 0.340447
Target:  5'- aUgCGGUUCGguugcuggauGGCGCCaUGuCCGCCGGc -3'
miRNA:   3'- cGgGCCGAGC----------UCGUGGaAC-GGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 54859 0.68 0.339675
Target:  5'- cGCCCGcGCgagggucaaauaaUCGGGCGCUUUcGCCGCgcacccaagagCGGa -3'
miRNA:   3'- -CGGGC-CG-------------AGCUCGUGGAA-CGGCG-----------GCC- -5'
23956 5' -61.9 NC_005262.1 + 39028 0.68 0.337368
Target:  5'- cGCCCGGCUCGccgcGGUGCUgaauccacuucgGCCGCaCGc -3'
miRNA:   3'- -CGGGCCGAGC----UCGUGGaa----------CGGCG-GCc -5'
23956 5' -61.9 NC_005262.1 + 43056 0.68 0.332787
Target:  5'- aCCCGGC-CG-GCACCgcgcGCCGCgGc -3'
miRNA:   3'- cGGGCCGaGCuCGUGGaa--CGGCGgCc -5'
23956 5' -61.9 NC_005262.1 + 37751 0.68 0.332787
Target:  5'- cGCCCcuGCUUGcGCGCCgcggcgaGCUGCUGGg -3'
miRNA:   3'- -CGGGc-CGAGCuCGUGGaa-----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 15053 0.68 0.328252
Target:  5'- cGCCCGaGUUCGAGCaggcauggucgcuguACCc-GCCucggGCCGGa -3'
miRNA:   3'- -CGGGC-CGAGCUCG---------------UGGaaCGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 57665 0.68 0.325254
Target:  5'- uCCCGGCcgcgcacaUCGAgGCgACUgUGCCGCCGu -3'
miRNA:   3'- cGGGCCG--------AGCU-CG-UGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 40320 0.68 0.324508
Target:  5'- cCCCGGCgaccgcuUCGAGCAUCg-GCUcacgGCCGGc -3'
miRNA:   3'- cGGGCCG-------AGCUCGUGGaaCGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 37996 0.68 0.317849
Target:  5'- aUCCGGUacUCGGGCGCC-UGCCaccaCGGg -3'
miRNA:   3'- cGGGCCG--AGCUCGUGGaACGGcg--GCC- -5'
23956 5' -61.9 NC_005262.1 + 5177 0.68 0.317849
Target:  5'- cGgCCGGCgucgCGGGCGCgggcGCgGCCGGc -3'
miRNA:   3'- -CgGGCCGa---GCUCGUGgaa-CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51248 0.68 0.317849
Target:  5'- cGCgCCGGCUaCGguaaggacggcaAGCugaACCUcaccgGCCGCCGGc -3'
miRNA:   3'- -CG-GGCCGA-GC------------UCG---UGGAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 52681 0.68 0.310572
Target:  5'- aGUCCGGgUCGuuGCACCaUUGCC-CCGc -3'
miRNA:   3'- -CGGGCCgAGCu-CGUGG-AACGGcGGCc -5'
23956 5' -61.9 NC_005262.1 + 4415 0.68 0.310572
Target:  5'- cGCCUGcuGCgCGAGCGCCUggagcucggcGuuGCCGGc -3'
miRNA:   3'- -CGGGC--CGaGCUCGUGGAa---------CggCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18639 0.68 0.310572
Target:  5'- cGUCCGcacgcaGCgCGAGCGCCUUGUCGCg-- -3'
miRNA:   3'- -CGGGC------CGaGCUCGUGGAACGGCGgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.