Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 38901 | 0.69 | 0.269572 |
Target: 5'- cUCCGGCUggcCGAGCucGCCUUcacgcGCCGgCGGa -3' miRNA: 3'- cGGGCCGA---GCUCG--UGGAA-----CGGCgGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3820 | 0.69 | 0.268284 |
Target: 5'- gGCCCGGaggaaggugcCGAGCGCCccgcgcgugacgUGCCGCUGa -3' miRNA: 3'- -CGGGCCga--------GCUCGUGGa-----------ACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 37461 | 0.7 | 0.263179 |
Target: 5'- cGCCCGGCaucagcuccUCGAGCAUC-UGCU-UCGGg -3' miRNA: 3'- -CGGGCCG---------AGCUCGUGGaACGGcGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 41662 | 0.7 | 0.250762 |
Target: 5'- uUCCGGC---GGCGCCgucaucGCCGCCGGc -3' miRNA: 3'- cGGGCCGagcUCGUGGaa----CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2694 | 0.7 | 0.238833 |
Target: 5'- aGCUCacGCUCGAGCGCCUcaaUGUCGUugCGGu -3' miRNA: 3'- -CGGGc-CGAGCUCGUGGA---ACGGCG--GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 16345 | 0.7 | 0.238833 |
Target: 5'- cUCUGGCUCGGcGCGCUgaucggcGCCGCCGc -3' miRNA: 3'- cGGGCCGAGCU-CGUGGaa-----CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 689 | 0.7 | 0.237084 |
Target: 5'- -gCCGGCggCGAaagguaguucagcaGCGCCUUGCaCGCCGc -3' miRNA: 3'- cgGGCCGa-GCU--------------CGUGGAACG-GCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 18381 | 0.7 | 0.233048 |
Target: 5'- aGCCCGGC-CGAGUuuugcgcggcuGCC-UGCUGCUGc -3' miRNA: 3'- -CGGGCCGaGCUCG-----------UGGaACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 16970 | 0.7 | 0.233048 |
Target: 5'- aGCCgGGCacCGAuauuGC-CCUgcUGCCGCCGGc -3' miRNA: 3'- -CGGgCCGa-GCU----CGuGGA--ACGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 29167 | 0.71 | 0.211078 |
Target: 5'- -gCCGGgUCGAGCuuCUUGCCGuuGu -3' miRNA: 3'- cgGGCCgAGCUCGugGAACGGCggCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 33156 | 0.71 | 0.211078 |
Target: 5'- uGUCCGaCgCGGGCACCUUGCCgagcGUCGGc -3' miRNA: 3'- -CGGGCcGaGCUCGUGGAACGG----CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 59190 | 0.72 | 0.195792 |
Target: 5'- gGCCCGcugaUgGAGCGCCUUGCgaaGUCGGg -3' miRNA: 3'- -CGGGCcg--AgCUCGUGGAACGg--CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3375 | 0.72 | 0.181944 |
Target: 5'- cGCuuGGUUCGcgaucucgaccacguGCGCCaUGCCGCCGa -3' miRNA: 3'- -CGggCCGAGCu--------------CGUGGaACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 22402 | 0.72 | 0.181482 |
Target: 5'- uCCCGcGUucgcacugaUCGAGCGCCgccUGCuCGCCGGc -3' miRNA: 3'- cGGGC-CG---------AGCUCGUGGa--ACG-GCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 18225 | 0.72 | 0.180104 |
Target: 5'- cGgCCGcaucagguacagcaGCgCGAGCGaauCCUUGCCGCCGGa -3' miRNA: 3'- -CgGGC--------------CGaGCUCGU---GGAACGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 14034 | 0.72 | 0.176922 |
Target: 5'- cGgCCGGagcCUCGGGCGCgggcGCCGCCGGc -3' miRNA: 3'- -CgGGCC---GAGCUCGUGgaa-CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 13770 | 0.72 | 0.176922 |
Target: 5'- gGCgCCGGCUCGGGCuucACUUcggugGgCGCCGGc -3' miRNA: 3'- -CG-GGCCGAGCUCG---UGGAa----CgGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 54907 | 0.72 | 0.176472 |
Target: 5'- cGCCaguucgaCGGCUC--GCACCUgacGCUGCCGGg -3' miRNA: 3'- -CGG-------GCCGAGcuCGUGGAa--CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 47184 | 0.73 | 0.168106 |
Target: 5'- cGCCCaGCUCGAaacgcgGCugCUUcGCCGCCu- -3' miRNA: 3'- -CGGGcCGAGCU------CGugGAA-CGGCGGcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 52211 | 0.73 | 0.163848 |
Target: 5'- aGUC--GCUCGAGCGCUggccGCCGCCGGc -3' miRNA: 3'- -CGGgcCGAGCUCGUGGaa--CGGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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