miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 15230 0.74 0.13314
Target:  5'- cGUUCGGgUCGAGCACCUUGUagcgGcCCGGc -3'
miRNA:   3'- -CGGGCCgAGCUCGUGGAACGg---C-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 16036 0.67 0.372348
Target:  5'- aGCCCGcGCgaugcCGGGUucGCCgcgGCCGgCGGc -3'
miRNA:   3'- -CGGGC-CGa----GCUCG--UGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 16345 0.7 0.238833
Target:  5'- cUCUGGCUCGGcGCGCUgaucggcGCCGCCGc -3'
miRNA:   3'- cGGGCCGAGCU-CGUGGaa-----CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 16459 0.66 0.41499
Target:  5'- uUCUGGCgcugcgucUCGAGCGCCgaaucgGUCGCCa- -3'
miRNA:   3'- cGGGCCG--------AGCUCGUGGaa----CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 16876 0.74 0.129697
Target:  5'- cGCCCGGC-CGcGCGCCggGCCGCa-- -3'
miRNA:   3'- -CGGGCCGaGCuCGUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 16970 0.7 0.233048
Target:  5'- aGCCgGGCacCGAuauuGC-CCUgcUGCCGCCGGc -3'
miRNA:   3'- -CGGgCCGa-GCU----CGuGGA--ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 17536 0.66 0.431962
Target:  5'- uGCCCuGCaUGAGC-CCUUGCgcgaacgCGCCGa -3'
miRNA:   3'- -CGGGcCGaGCUCGuGGAACG-------GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 18085 0.67 0.389044
Target:  5'- -aCUGGCUCGAaUGCCUcgaaGCgGCCGGc -3'
miRNA:   3'- cgGGCCGAGCUcGUGGAa---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18225 0.72 0.180104
Target:  5'- cGgCCGcaucagguacagcaGCgCGAGCGaauCCUUGCCGCCGGa -3'
miRNA:   3'- -CgGGC--------------CGaGCUCGU---GGAACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18381 0.7 0.233048
Target:  5'- aGCCCGGC-CGAGUuuugcgcggcuGCC-UGCUGCUGc -3'
miRNA:   3'- -CGGGCCGaGCUCG-----------UGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 18401 0.69 0.274122
Target:  5'- cGCaCCGGCUucCGAGCGCCUcaaugagcgcgacuUGCCuuuccaucugGUCGGc -3'
miRNA:   3'- -CG-GGCCGA--GCUCGUGGA--------------ACGG----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18639 0.68 0.310572
Target:  5'- cGUCCGcacgcaGCgCGAGCGCCUUGUCGCg-- -3'
miRNA:   3'- -CGGGC------CGaGCUCGUGGAACGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 19117 0.66 0.451183
Target:  5'- cGUUCGGaUCGGGCGCgggcgcGUCGCCGGc -3'
miRNA:   3'- -CGGGCCgAGCUCGUGgaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 20121 0.66 0.451183
Target:  5'- gGCCCGGCUUGGcUugCguucagGUCGCCa- -3'
miRNA:   3'- -CGGGCCGAGCUcGugGaa----CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 20288 0.66 0.432866
Target:  5'- uGCUaaCGGUUgCGAcCGCCUUGCCGuCCGc -3'
miRNA:   3'- -CGG--GCCGA-GCUcGUGGAACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 20442 0.67 0.364185
Target:  5'- uGCaCGGUUCcGGCACCgucGCCGCgUGGg -3'
miRNA:   3'- -CGgGCCGAGcUCGUGGaa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 20579 0.67 0.389044
Target:  5'- aGCCCGGC--GAGCAgCgcgcgGCgCGCCGc -3'
miRNA:   3'- -CGGGCCGagCUCGUgGaa---CG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 20713 0.66 0.422979
Target:  5'- uGCCCGGUcaggUCGAugaugaagcugccGCGgCgcgcggUGCCGgCCGGg -3'
miRNA:   3'- -CGGGCCG----AGCU-------------CGUgGa-----ACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 21562 0.69 0.278733
Target:  5'- cGCUCGGCaucggaaccgcgagCGGGUACgUcgUGCCGCCGa -3'
miRNA:   3'- -CGGGCCGa-------------GCUCGUGgA--ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 22212 0.68 0.309851
Target:  5'- gGCUCGcGCUCGAcaagcucacggccGCGCCgcccacGCCGgCCGGc -3'
miRNA:   3'- -CGGGC-CGAGCU-------------CGUGGaa----CGGC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.