Results 81 - 100 of 140 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 33336 | 0.66 | 0.432866 |
Target: 5'- uGCgUcGCUgCGcGGCACCgUGCCGCCGa -3' miRNA: 3'- -CGgGcCGA-GC-UCGUGGaACGGCGGCc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 34339 | 0.67 | 0.405353 |
Target: 5'- cGCCuCGGCgaccuGCGCCUcUGCCGCagccuugCGGg -3' miRNA: 3'- -CGG-GCCGagcu-CGUGGA-ACGGCG-------GCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 34466 | 0.67 | 0.406223 |
Target: 5'- uGCCCGGagccuacggcgUUCGAGCACau--CCGCgCGGc -3' miRNA: 3'- -CGGGCC-----------GAGCUCGUGgaacGGCG-GCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 35378 | 0.69 | 0.27609 |
Target: 5'- gGCCCGauucgacCUCGAGCACg-UGCCGCuCGu -3' miRNA: 3'- -CGGGCc------GAGCUCGUGgaACGGCG-GCc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 35924 | 0.8 | 0.046569 |
Target: 5'- uCuuGGCUCGGcCGCCUUGCCGCCGu -3' miRNA: 3'- cGggCCGAGCUcGUGGAACGGCGGCc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 36127 | 0.69 | 0.303422 |
Target: 5'- uCUCGGCcCGAuUAUCUUGCUGUCGGg -3' miRNA: 3'- cGGGCCGaGCUcGUGGAACGGCGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 36622 | 0.68 | 0.340447 |
Target: 5'- aUgCGGUUCGguugcuggauGGCGCCaUGuCCGCCGGc -3' miRNA: 3'- cGgGCCGAGC----------UCGUGGaAC-GGCGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 37461 | 0.7 | 0.263179 |
Target: 5'- cGCCCGGCaucagcuccUCGAGCAUC-UGCU-UCGGg -3' miRNA: 3'- -CGGGCCG---------AGCUCGUGGaACGGcGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 37751 | 0.68 | 0.332787 |
Target: 5'- cGCCCcuGCUUGcGCGCCgcggcgaGCUGCUGGg -3' miRNA: 3'- -CGGGc-CGAGCuCGUGGaa-----CGGCGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 37996 | 0.68 | 0.317849 |
Target: 5'- aUCCGGUacUCGGGCGCC-UGCCaccaCGGg -3' miRNA: 3'- cGGGCCG--AGCUCGUGGaACGGcg--GCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 38901 | 0.69 | 0.269572 |
Target: 5'- cUCCGGCUggcCGAGCucGCCUUcacgcGCCGgCGGa -3' miRNA: 3'- cGGGCCGA---GCUCG--UGGAA-----CGGCgGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 39028 | 0.68 | 0.337368 |
Target: 5'- cGCCCGGCUCGccgcGGUGCUgaauccacuucgGCCGCaCGc -3' miRNA: 3'- -CGGGCCGAGC----UCGUGGaa----------CGGCG-GCc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 40320 | 0.68 | 0.324508 |
Target: 5'- cCCCGGCgaccgcuUCGAGCAUCg-GCUcacgGCCGGc -3' miRNA: 3'- cGGGCCG-------AGCUCGUGGaaCGG----CGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 41034 | 0.66 | 0.441056 |
Target: 5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3' miRNA: 3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 41199 | 0.82 | 0.033359 |
Target: 5'- cGCCCGGCgaccgcuUCGAGCACCguaUGaCUGCCGGc -3' miRNA: 3'- -CGGGCCG-------AGCUCGUGGa--AC-GGCGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 41647 | 0.69 | 0.296399 |
Target: 5'- aGCUCGGCgaugCGGGCAgCCgcgGCgGCCa- -3' miRNA: 3'- -CGGGCCGa---GCUCGU-GGaa-CGgCGGcc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 41662 | 0.7 | 0.250762 |
Target: 5'- uUCCGGC---GGCGCCgucaucGCCGCCGGc -3' miRNA: 3'- cGGGCCGagcUCGUGGaa----CGGCGGCC- -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 41687 | 0.67 | 0.380635 |
Target: 5'- nGCaCCGGCaUCG-GCAUCUaUGCCGCa-- -3' miRNA: 3'- -CG-GGCCG-AGCuCGUGGA-ACGGCGgcc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 43056 | 0.68 | 0.332787 |
Target: 5'- aCCCGGC-CG-GCACCgcgcGCCGCgGc -3' miRNA: 3'- cGGGCCGaGCuCGUGGaa--CGGCGgCc -5' |
|||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 45224 | 0.67 | 0.389044 |
Target: 5'- cGCCgGGCUCG---GCCUgaaCGCCGGc -3' miRNA: 3'- -CGGgCCGAGCucgUGGAacgGCGGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home