miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 51222 0.66 0.41147
Target:  5'- cGCCggCGGCagcagcagcucgaCGAGCGCCgccgcgaccUGCCGCCGc -3'
miRNA:   3'- -CGG--GCCGa------------GCUCGUGGa--------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 50777 0.68 0.348234
Target:  5'- gGUgCGGUUCGAGaucaaGCCgaagGUCGCCGa -3'
miRNA:   3'- -CGgGCCGAGCUCg----UGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 50600 0.69 0.269572
Target:  5'- aCCCGGUagcgCGAGCGCUUcggcugaaccUGuuGCUGGa -3'
miRNA:   3'- cGGGCCGa---GCUCGUGGA----------ACggCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 50282 0.73 0.147769
Target:  5'- cGCgCCGGC-CGAGC-CCgugacgGCCGCgCGGa -3'
miRNA:   3'- -CG-GGCCGaGCUCGuGGaa----CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 50035 0.67 0.389044
Target:  5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49849 0.66 0.429255
Target:  5'- gGCCCGGUgccggCGgcGGUACCggaagcagcucaGCCGgCCGGa -3'
miRNA:   3'- -CGGGCCGa----GC--UCGUGGaa----------CGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 49763 0.66 0.451183
Target:  5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49731 0.66 0.441971
Target:  5'- -aCCGGCggcCGAagccGCACCgacGCCGgCGGc -3'
miRNA:   3'- cgGGCCGa--GCU----CGUGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 48342 0.67 0.397575
Target:  5'- aGCUCGGCaCGAccgacccggcGCugCUgGCgGCCGGc -3'
miRNA:   3'- -CGGGCCGaGCU----------CGugGAaCGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 47715 0.69 0.27609
Target:  5'- cGCCgggcggCGGCUCGccgccuGUAUCUggugcGCCGCCGGc -3'
miRNA:   3'- -CGG------GCCGAGCu-----CGUGGAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 47199 0.69 0.302714
Target:  5'- uGCUCgaaauggGGCUCGcGGCACUgucGCCGCCGc -3'
miRNA:   3'- -CGGG-------CCGAGC-UCGUGGaa-CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 47184 0.73 0.168106
Target:  5'- cGCCCaGCUCGAaacgcgGCugCUUcGCCGCCu- -3'
miRNA:   3'- -CGGGcCGAGCU------CGugGAA-CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 47078 0.69 0.282064
Target:  5'- uGCCCGGUgcgcacagggguaUCGAGCACCUgcgugacgaUGCacuccuCGcCCGGc -3'
miRNA:   3'- -CGGGCCG-------------AGCUCGUGGA---------ACG------GC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 46924 0.67 0.372348
Target:  5'- gGCCCGGCgcgcggcCGGGCGCCU-GCaucaGuuGa -3'
miRNA:   3'- -CGGGCCGa------GCUCGUGGAaCGg---CggCc -5'
23956 5' -61.9 NC_005262.1 + 46537 0.69 0.269572
Target:  5'- aGCCCaGCgCG-GCGCCg-GCCGCCGc -3'
miRNA:   3'- -CGGGcCGaGCuCGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 46395 0.66 0.441971
Target:  5'- cGCCCaGCgucUCG-GCAUUgucgGCCGCCGa -3'
miRNA:   3'- -CGGGcCG---AGCuCGUGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 46230 0.68 0.356147
Target:  5'- cCUCGGCUuCGcGCGCCgccgcgGCUGCCGc -3'
miRNA:   3'- cGGGCCGA-GCuCGUGGaa----CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 46139 0.66 0.422979
Target:  5'- aGCUCGGCgcgcuggCGGGCgaucucuGCC-UGCUGCuCGGc -3'
miRNA:   3'- -CGGGCCGa------GCUCG-------UGGaACGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 46084 0.69 0.282734
Target:  5'- uUCCGGCUCGGGCucguUCggGCCagcgaccacgGCCGGc -3'
miRNA:   3'- cGGGCCGAGCUCGu---GGaaCGG----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 46028 0.66 0.450257
Target:  5'- cGCUCGGCcucgaauUCGAGCAgCgUGUCGuCCGc -3'
miRNA:   3'- -CGGGCCG-------AGCUCGUgGaACGGC-GGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.