miRNA display CGI


Results 61 - 80 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 33204 0.68 0.356147
Target:  5'- cGCCCuucagcGGCUUG-GCGgucuugccguCCUUGCUGCCGu -3'
miRNA:   3'- -CGGG------CCGAGCuCGU----------GGAACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 33156 0.71 0.211078
Target:  5'- uGUCCGaCgCGGGCACCUUGCCgagcGUCGGc -3'
miRNA:   3'- -CGGGCcGaGCUCGUGGAACGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 32896 0.66 0.460499
Target:  5'- uGCCaucCUCGAGCgcgagcggcgucACCauccgGCCGCCGGc -3'
miRNA:   3'- -CGGgccGAGCUCG------------UGGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 32674 0.67 0.389044
Target:  5'- cGCuUCGaGUUCGcGCugCcgGCCGCCGGc -3'
miRNA:   3'- -CG-GGC-CGAGCuCGugGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 31913 0.66 0.423872
Target:  5'- aCCC-GCUCGAcGCGCCggacGUCGCCa- -3'
miRNA:   3'- cGGGcCGAGCU-CGUGGaa--CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 31888 0.67 0.40102
Target:  5'- cGUCCGGCgcgUCGAGCGggUUGCCcgcguagcccgugaaGUCGGg -3'
miRNA:   3'- -CGGGCCG---AGCUCGUggAACGG---------------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 30938 0.75 0.116733
Target:  5'- cGCUCGGCgccgcacgugCGGGCcgaaACCUUGUCGCCGa -3'
miRNA:   3'- -CGGGCCGa---------GCUCG----UGGAACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 30878 0.67 0.406223
Target:  5'- gGCgCUGGCgagCGucGCGCgUgcgacGCCGCCGGc -3'
miRNA:   3'- -CG-GGCCGa--GCu-CGUGgAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 30633 0.67 0.372348
Target:  5'- uGCCCGGCaucUCGAcgACggUGCCGCCc- -3'
miRNA:   3'- -CGGGCCG---AGCUcgUGgaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 29875 0.84 0.025143
Target:  5'- cGCCgCGaGCUCGAGCACCgccgcuaccgaucggGCCGCCGGc -3'
miRNA:   3'- -CGG-GC-CGAGCUCGUGGaa-------------CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 29643 0.67 0.372348
Target:  5'- gGCaUCGGCagCGAGCGgCaUGCCGCCc- -3'
miRNA:   3'- -CG-GGCCGa-GCUCGUgGaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 29167 0.71 0.211078
Target:  5'- -gCCGGgUCGAGCuuCUUGCCGuuGu -3'
miRNA:   3'- cgGGCCgAGCUCGugGAACGGCggCc -5'
23956 5' -61.9 NC_005262.1 + 28838 0.73 0.151648
Target:  5'- uUgCGGC-CGAGCGCCgcgucgaacUUGCCGCCGa -3'
miRNA:   3'- cGgGCCGaGCUCGUGG---------AACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 28409 0.69 0.302714
Target:  5'- cGCgCGGUaUUGAGCGCCgcgUGCgccagcauauuucCGCCGGu -3'
miRNA:   3'- -CGgGCCG-AGCUCGUGGa--ACG-------------GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 28214 0.66 0.432866
Target:  5'- aGCCCGcGC-CGAGCACaacaUUcGCgcucuuucccgCGCCGGc -3'
miRNA:   3'- -CGGGC-CGaGCUCGUGg---AA-CG-----------GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 24577 0.68 0.356147
Target:  5'- uCCCGGC-CGc-CugCUUGCUGgCCGGa -3'
miRNA:   3'- cGGGCCGaGCucGugGAACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 23461 0.66 0.441971
Target:  5'- cGCgCCGGCcgUGAGCcgauGCUcgaagcgGUCGCCGGg -3'
miRNA:   3'- -CG-GGCCGa-GCUCG----UGGaa-----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 23250 0.66 0.451183
Target:  5'- uGCCCGGCgcguaaGAGcCGCCc-GCCGCg-- -3'
miRNA:   3'- -CGGGCCGag----CUC-GUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 23070 0.76 0.099537
Target:  5'- cGCCCGuGCUCGAGgGCgUcagcGCCGCCGu -3'
miRNA:   3'- -CGGGC-CGAGCUCgUGgAa---CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 22402 0.72 0.181482
Target:  5'- uCCCGcGUucgcacugaUCGAGCGCCgccUGCuCGCCGGc -3'
miRNA:   3'- cGGGC-CG---------AGCUCGUGGa--ACG-GCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.