Results 121 - 140 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 9935 | 0.75 | 0.110713 |
Target: 5'- cGgCCGGCUUGAGCGCgaucugCUUGCCGuCCGc -3' miRNA: 3'- -CgGGCCGAGCUCGUG------GAACGGC-GGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 8387 | 0.67 | 0.389044 |
Target: 5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3' miRNA: 3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 7798 | 0.69 | 0.28882 |
Target: 5'- uGCgCuGCUCGAGCGCCUucugguaUGCCuuguaGCCGa -3' miRNA: 3'- -CGgGcCGAGCUCGUGGA-------ACGG-----CGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6858 | 0.67 | 0.395003 |
Target: 5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3' miRNA: 3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6729 | 0.66 | 0.420306 |
Target: 5'- gGCCCGuGCUUGucgaacaucucgcGCGCCUcguugUGCUcgugGCCGGg -3' miRNA: 3'- -CGGGC-CGAGCu------------CGUGGA-----ACGG----CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6605 | 0.67 | 0.40102 |
Target: 5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3' miRNA: 3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6287 | 0.73 | 0.159686 |
Target: 5'- uGCCCGGCgCGAcgcugaacuucgGCGCCUcGUCGgCCGGc -3' miRNA: 3'- -CGGGCCGaGCU------------CGUGGAaCGGC-GGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6124 | 0.74 | 0.123057 |
Target: 5'- cGCCCGGCgcgCGAGaagucgAUCgUGCCGCCGa -3' miRNA: 3'- -CGGGCCGa--GCUCg-----UGGaACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 5177 | 0.68 | 0.317849 |
Target: 5'- cGgCCGGCgucgCGGGCGCgggcGCgGCCGGc -3' miRNA: 3'- -CgGGCCGa---GCUCGUGgaa-CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 4415 | 0.68 | 0.310572 |
Target: 5'- cGCCUGcuGCgCGAGCGCCUggagcucggcGuuGCCGGc -3' miRNA: 3'- -CGGGC--CGaGCUCGUGGAa---------CggCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3820 | 0.69 | 0.268284 |
Target: 5'- gGCCCGGaggaaggugcCGAGCGCCccgcgcgugacgUGCCGCUGa -3' miRNA: 3'- -CGGGCCga--------GCUCGUGGa-----------ACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3624 | 0.79 | 0.061229 |
Target: 5'- cGCCCacuGGC-CGAGCGCCUUcacgGCgGCCGGg -3' miRNA: 3'- -CGGG---CCGaGCUCGUGGAA----CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3375 | 0.72 | 0.181944 |
Target: 5'- cGCuuGGUUCGcgaucucgaccacguGCGCCaUGCCGCCGa -3' miRNA: 3'- -CGggCCGAGCu--------------CGUGGaACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 3244 | 0.67 | 0.380635 |
Target: 5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3' miRNA: 3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2977 | 0.69 | 0.27609 |
Target: 5'- uGCCCGGCaUCGGGCAaug-GCCuCCGu -3' miRNA: 3'- -CGGGCCG-AGCUCGUggaaCGGcGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2698 | 0.67 | 0.403617 |
Target: 5'- cGCCCGGUacaucuucagguuaUCGGGCugcGCCUUcGUCGaCGGc -3' miRNA: 3'- -CGGGCCG--------------AGCUCG---UGGAA-CGGCgGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2694 | 0.7 | 0.238833 |
Target: 5'- aGCUCacGCUCGAGCGCCUcaaUGUCGUugCGGu -3' miRNA: 3'- -CGGGc-CGAGCUCGUGGA---ACGGCG--GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2658 | 0.69 | 0.296399 |
Target: 5'- uGCgCGGCgcCGGGCGgcguCCUgGCCGCCGu -3' miRNA: 3'- -CGgGCCGa-GCUCGU----GGAaCGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 2516 | 0.66 | 0.459563 |
Target: 5'- aGgCUGGCcgcgccgaUCGAGUcugucacgaacugGCCcagGCCGCCGGu -3' miRNA: 3'- -CgGGCCG--------AGCUCG-------------UGGaa-CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 689 | 0.7 | 0.237084 |
Target: 5'- -gCCGGCggCGAaagguaguucagcaGCGCCUUGCaCGCCGc -3' miRNA: 3'- cgGGCCGa-GCU--------------CGUGGAACG-GCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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