miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 46537 0.69 0.269572
Target:  5'- aGCCCaGCgCG-GCGCCg-GCCGCCGc -3'
miRNA:   3'- -CGGGcCGaGCuCGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 50600 0.69 0.269572
Target:  5'- aCCCGGUagcgCGAGCGCUUcggcugaaccUGuuGCUGGa -3'
miRNA:   3'- cGGGCCGa---GCUCGUGGA----------ACggCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 40320 0.68 0.324508
Target:  5'- cCCCGGCgaccgcuUCGAGCAUCg-GCUcacgGCCGGc -3'
miRNA:   3'- cGGGCCG-------AGCUCGUGGaaCGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51248 0.68 0.317849
Target:  5'- cGCgCCGGCUaCGguaaggacggcaAGCugaACCUcaccgGCCGCCGGc -3'
miRNA:   3'- -CG-GGCCGA-GC------------UCG---UGGAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 5177 0.68 0.317849
Target:  5'- cGgCCGGCgucgCGGGCGCgggcGCgGCCGGc -3'
miRNA:   3'- -CgGGCCGa---GCUCGUGgaa-CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 22212 0.68 0.309851
Target:  5'- gGCUCGcGCUCGAcaagcucacggccGCGCCgcccacGCCGgCCGGc -3'
miRNA:   3'- -CGGGC-CGAGCU-------------CGUGGaa----CGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 47199 0.69 0.302714
Target:  5'- uGCUCgaaauggGGCUCGcGGCACUgucGCCGCCGc -3'
miRNA:   3'- -CGGG-------CCGAGC-UCGUGGaa-CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 2658 0.69 0.296399
Target:  5'- uGCgCGGCgcCGGGCGgcguCCUgGCCGCCGu -3'
miRNA:   3'- -CGgGCCGa-GCUCGU----GGAaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 11394 0.69 0.292246
Target:  5'- cGCgCGGCUCcAcgccgaagccgcgccGCGCCggGCCGCCGa -3'
miRNA:   3'- -CGgGCCGAGcU---------------CGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 52676 0.69 0.28882
Target:  5'- aGCuuGugaagcaGCUCGAGCAggaagGCCGCCGGc -3'
miRNA:   3'- -CGggC-------CGAGCUCGUggaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 47715 0.69 0.27609
Target:  5'- cGCCgggcggCGGCUCGccgccuGUAUCUggugcGCCGCCGGc -3'
miRNA:   3'- -CGG------GCCGAGCu-----CGUGGAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2977 0.69 0.27609
Target:  5'- uGCCCGGCaUCGGGCAaug-GCCuCCGu -3'
miRNA:   3'- -CGGGCCG-AGCUCGUggaaCGGcGGCc -5'
23956 5' -61.9 NC_005262.1 + 18401 0.69 0.274122
Target:  5'- cGCaCCGGCUucCGAGCGCCUcaaugagcgcgacuUGCCuuuccaucugGUCGGc -3'
miRNA:   3'- -CG-GGCCGA--GCUCGUGGA--------------ACGG----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 63303 0.69 0.269572
Target:  5'- gGCUCGGCgUCGAcguggaacacgcGCGCCgcGUCGCCGa -3'
miRNA:   3'- -CGGGCCG-AGCU------------CGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 23250 0.66 0.451183
Target:  5'- uGCCCGGCgcguaaGAGcCGCCc-GCCGCg-- -3'
miRNA:   3'- -CGGGCCGag----CUC-GUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 11461 0.66 0.451183
Target:  5'- aUCCGGCgauacgCGuccGGCGCCUUGUU-CCGGa -3'
miRNA:   3'- cGGGCCGa-----GC---UCGUGGAACGGcGGCC- -5'
23956 5' -61.9 NC_005262.1 + 19117 0.66 0.451183
Target:  5'- cGUUCGGaUCGGGCGCgggcgcGUCGCCGGc -3'
miRNA:   3'- -CGGGCCgAGCUCGUGgaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2516 0.66 0.459563
Target:  5'- aGgCUGGCcgcgccgaUCGAGUcugucacgaacugGCCcagGCCGCCGGu -3'
miRNA:   3'- -CgGGCCG--------AGCUCG-------------UGGaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 32896 0.66 0.460499
Target:  5'- uGCCaucCUCGAGCgcgagcggcgucACCauccgGCCGCCGGc -3'
miRNA:   3'- -CGGgccGAGCUCG------------UGGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 10834 1.1 0.000262
Target:  5'- uGCCCGGCUCGAGCACCUUGCCGCCGGc -3'
miRNA:   3'- -CGGGCCGAGCUCGUGGAACGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.