miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 19117 0.66 0.451183
Target:  5'- cGUUCGGaUCGGGCGCgggcgcGUCGCCGGc -3'
miRNA:   3'- -CGGGCCgAGCUCGUGgaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2516 0.66 0.459563
Target:  5'- aGgCUGGCcgcgccgaUCGAGUcugucacgaacugGCCcagGCCGCCGGu -3'
miRNA:   3'- -CgGGCCG--------AGCUCG-------------UGGaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 32896 0.66 0.460499
Target:  5'- uGCCaucCUCGAGCgcgagcggcgucACCauccgGCCGCCGGc -3'
miRNA:   3'- -CGGgccGAGCUCG------------UGGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 17536 0.66 0.431962
Target:  5'- uGCCCuGCaUGAGC-CCUUGCgcgaacgCGCCGa -3'
miRNA:   3'- -CGGGcCGaGCUCGuGGAACG-------GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 20713 0.66 0.422979
Target:  5'- uGCCCGGUcaggUCGAugaugaagcugccGCGgCgcgcggUGCCGgCCGGg -3'
miRNA:   3'- -CGGGCCG----AGCU-------------CGUgGa-----ACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 46139 0.66 0.422979
Target:  5'- aGCUCGGCgcgcuggCGGGCgaucucuGCC-UGCUGCuCGGc -3'
miRNA:   3'- -CGGGCCGa------GCUCG-------UGGaACGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 12599 0.67 0.372348
Target:  5'- cGCCCGcGCggcuccagCGGGcCGCCgcGUCGUCGGc -3'
miRNA:   3'- -CGGGC-CGa-------GCUC-GUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 15151 0.67 0.380635
Target:  5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3'
miRNA:   3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 3244 0.67 0.380635
Target:  5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3'
miRNA:   3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5'
23956 5' -61.9 NC_005262.1 + 55560 0.67 0.387353
Target:  5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3'
miRNA:   3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 14094 0.67 0.388198
Target:  5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3'
miRNA:   3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 8387 0.67 0.389044
Target:  5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3'
miRNA:   3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5'
23956 5' -61.9 NC_005262.1 + 6858 0.67 0.395003
Target:  5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3'
miRNA:   3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6605 0.67 0.40102
Target:  5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3'
miRNA:   3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 31888 0.67 0.40102
Target:  5'- cGUCCGGCgcgUCGAGCGggUUGCCcgcguagcccgugaaGUCGGg -3'
miRNA:   3'- -CGGGCCG---AGCUCGUggAACGG---------------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2698 0.67 0.403617
Target:  5'- cGCCCGGUacaucuucagguuaUCGGGCugcGCCUUcGUCGaCGGc -3'
miRNA:   3'- -CGGGCCG--------------AGCUCG---UGGAA-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 34339 0.67 0.405353
Target:  5'- cGCCuCGGCgaccuGCGCCUcUGCCGCagccuugCGGg -3'
miRNA:   3'- -CGG-GCCGagcu-CGUGGA-ACGGCG-------GCC- -5'
23956 5' -61.9 NC_005262.1 + 30878 0.67 0.406223
Target:  5'- gGCgCUGGCgagCGucGCGCgUgcgacGCCGCCGGc -3'
miRNA:   3'- -CG-GGCCGa--GCu-CGUGgAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51222 0.66 0.41147
Target:  5'- cGCCggCGGCagcagcagcucgaCGAGCGCCgccgcgaccUGCCGCCGc -3'
miRNA:   3'- -CGG--GCCGa------------GCUCGUGGa--------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 16459 0.66 0.41499
Target:  5'- uUCUGGCgcugcgucUCGAGCGCCgaaucgGUCGCCa- -3'
miRNA:   3'- cGGGCCG--------AGCUCGUGGaa----CGGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.