miRNA display CGI


Results 121 - 140 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 16036 0.67 0.372348
Target:  5'- aGCCCGcGCgaugcCGGGUucGCCgcgGCCGgCGGc -3'
miRNA:   3'- -CGGGC-CGa----GCUCG--UGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 59221 0.67 0.364185
Target:  5'- cGCCCGaGC---AGCGCC--GCCGCUGGc -3'
miRNA:   3'- -CGGGC-CGagcUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 10073 0.67 0.364185
Target:  5'- -gUCGcGUUCGAGCGCCacgGCCuucgacgcgGCCGGg -3'
miRNA:   3'- cgGGC-CGAGCUCGUGGaa-CGG---------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 46230 0.68 0.356147
Target:  5'- cCUCGGCUuCGcGCGCCgccgcgGCUGCCGc -3'
miRNA:   3'- cGGGCCGA-GCuCGUGGaa----CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 33204 0.68 0.356147
Target:  5'- cGCCCuucagcGGCUUG-GCGgucuugccguCCUUGCUGCCGu -3'
miRNA:   3'- -CGGG------CCGAGCuCGU----------GGAACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 24577 0.68 0.356147
Target:  5'- uCCCGGC-CGc-CugCUUGCUGgCCGGa -3'
miRNA:   3'- cGGGCCGaGCucGugGAACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 60046 0.68 0.340447
Target:  5'- ---gGGCUCGAuCGCCUgaGCCGCgCGGa -3'
miRNA:   3'- cgggCCGAGCUcGUGGAa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 54859 0.68 0.339675
Target:  5'- cGCCCGcGCgagggucaaauaaUCGGGCGCUUUcGCCGCgcacccaagagCGGa -3'
miRNA:   3'- -CGGGC-CG-------------AGCUCGUGGAA-CGGCG-----------GCC- -5'
23956 5' -61.9 NC_005262.1 + 30633 0.67 0.372348
Target:  5'- uGCCCGGCaucUCGAcgACggUGCCGCCc- -3'
miRNA:   3'- -CGGGCCG---AGCUcgUGgaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 46924 0.67 0.372348
Target:  5'- gGCCCGGCgcgcggcCGGGCGCCU-GCaucaGuuGa -3'
miRNA:   3'- -CGGGCCGa------GCUCGUGGAaCGg---CggCc -5'
23956 5' -61.9 NC_005262.1 + 12599 0.67 0.372348
Target:  5'- cGCCCGcGCggcuccagCGGGcCGCCgcGUCGUCGGc -3'
miRNA:   3'- -CGGGC-CGa-------GCUC-GUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 31888 0.67 0.40102
Target:  5'- cGUCCGGCgcgUCGAGCGggUUGCCcgcguagcccgugaaGUCGGg -3'
miRNA:   3'- -CGGGCCG---AGCUCGUggAACGG---------------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6605 0.67 0.40102
Target:  5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3'
miRNA:   3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6858 0.67 0.395003
Target:  5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3'
miRNA:   3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 8387 0.67 0.389044
Target:  5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3'
miRNA:   3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5'
23956 5' -61.9 NC_005262.1 + 14094 0.67 0.388198
Target:  5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3'
miRNA:   3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 55560 0.67 0.387353
Target:  5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3'
miRNA:   3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 3244 0.67 0.380635
Target:  5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3'
miRNA:   3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5'
23956 5' -61.9 NC_005262.1 + 15151 0.67 0.380635
Target:  5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3'
miRNA:   3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 39028 0.68 0.337368
Target:  5'- cGCCCGGCUCGccgcGGUGCUgaauccacuucgGCCGCaCGc -3'
miRNA:   3'- -CGGGCCGAGC----UCGUGGaa----------CGGCG-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.