miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 37461 0.7 0.263179
Target:  5'- cGCCCGGCaucagcuccUCGAGCAUC-UGCU-UCGGg -3'
miRNA:   3'- -CGGGCCG---------AGCUCGUGGaACGGcGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12647 0.83 0.031129
Target:  5'- cGCUCGGCgacuucuucacggcgUCGAGCGCCUUGUCGaCCGGc -3'
miRNA:   3'- -CGGGCCG---------------AGCUCGUGGAACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 9935 0.75 0.110713
Target:  5'- cGgCCGGCUUGAGCGCgaucugCUUGCCGuCCGc -3'
miRNA:   3'- -CgGGCCGAGCUCGUG------GAACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 7798 0.69 0.28882
Target:  5'- uGCgCuGCUCGAGCGCCUucugguaUGCCuuguaGCCGa -3'
miRNA:   3'- -CGgGcCGAGCUCGUGGA-------ACGG-----CGGCc -5'
23956 5' -61.9 NC_005262.1 + 47078 0.69 0.282064
Target:  5'- uGCCCGGUgcgcacagggguaUCGAGCACCUgcgugacgaUGCacuccuCGcCCGGc -3'
miRNA:   3'- -CGGGCCG-------------AGCUCGUGGA---------ACG------GC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 21562 0.69 0.278733
Target:  5'- cGCUCGGCaucggaaccgcgagCGGGUACgUcgUGCCGCCGa -3'
miRNA:   3'- -CGGGCCGa-------------GCUCGUGgA--ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 51548 0.66 0.441971
Target:  5'- -aCCGGCUCGcGUACCacgugGUCGCgcgCGGa -3'
miRNA:   3'- cgGGCCGAGCuCGUGGaa---CGGCG---GCC- -5'
23956 5' -61.9 NC_005262.1 + 49763 0.66 0.451183
Target:  5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 41034 0.66 0.441056
Target:  5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3'
miRNA:   3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 59694 0.66 0.451183
Target:  5'- -aUCGGCgugccgccacgCGGGCGCUacGUCGCCGGc -3'
miRNA:   3'- cgGGCCGa----------GCUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 50600 0.69 0.269572
Target:  5'- aCCCGGUagcgCGAGCGCUUcggcugaaccUGuuGCUGGa -3'
miRNA:   3'- cGGGCCGa---GCUCGUGGA----------ACggCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 50777 0.68 0.348234
Target:  5'- gGUgCGGUUCGAGaucaaGCCgaagGUCGCCGa -3'
miRNA:   3'- -CGgGCCGAGCUCg----UGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 36622 0.68 0.340447
Target:  5'- aUgCGGUUCGguugcuggauGGCGCCaUGuCCGCCGGc -3'
miRNA:   3'- cGgGCCGAGC----------UCGUGGaAC-GGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 43056 0.68 0.332787
Target:  5'- aCCCGGC-CG-GCACCgcgcGCCGCgGc -3'
miRNA:   3'- cGGGCCGaGCuCGUGGaa--CGGCGgCc -5'
23956 5' -61.9 NC_005262.1 + 40320 0.68 0.324508
Target:  5'- cCCCGGCgaccgcuUCGAGCAUCg-GCUcacgGCCGGc -3'
miRNA:   3'- cGGGCCG-------AGCUCGUGGaaCGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 46537 0.69 0.269572
Target:  5'- aGCCCaGCgCG-GCGCCg-GCCGCCGc -3'
miRNA:   3'- -CGGGcCGaGCuCGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 15053 0.68 0.328252
Target:  5'- cGCCCGaGUUCGAGCaggcauggucgcuguACCc-GCCucggGCCGGa -3'
miRNA:   3'- -CGGGC-CGAGCUCG---------------UGGaaCGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49731 0.66 0.441971
Target:  5'- -aCCGGCggcCGAagccGCACCgacGCCGgCGGc -3'
miRNA:   3'- cgGGCCGa--GCU----CGUGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 60501 0.68 0.348234
Target:  5'- cGCCgGGCcgCGcGGCGCag-GCCGCCa- -3'
miRNA:   3'- -CGGgCCGa-GC-UCGUGgaaCGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 63303 0.69 0.269572
Target:  5'- gGCUCGGCgUCGAcguggaacacgcGCGCCgcGUCGCCGa -3'
miRNA:   3'- -CGGGCCG-AGCU------------CGUGGaaCGGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.