Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23956 | 5' | -61.9 | NC_005262.1 | + | 47199 | 0.69 | 0.302714 |
Target: 5'- uGCUCgaaauggGGCUCGcGGCACUgucGCCGCCGc -3' miRNA: 3'- -CGGG-------CCGAGC-UCGUGGaa-CGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 31913 | 0.66 | 0.423872 |
Target: 5'- aCCC-GCUCGAcGCGCCggacGUCGCCa- -3' miRNA: 3'- cGGGcCGAGCU-CGUGGaa--CGGCGGcc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 49763 | 0.66 | 0.451183 |
Target: 5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3' miRNA: 3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 12243 | 0.66 | 0.423872 |
Target: 5'- aGCaugCGGUcgcgucgauggUCGGGCACCUgucgaucGCgGCCGGc -3' miRNA: 3'- -CGg--GCCG-----------AGCUCGUGGAa------CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 6729 | 0.66 | 0.420306 |
Target: 5'- gGCCCGuGCUUGucgaacaucucgcGCGCCUcguugUGCUcgugGCCGGg -3' miRNA: 3'- -CGGGC-CGAGCu------------CGUGGA-----ACGG----CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 34466 | 0.67 | 0.406223 |
Target: 5'- uGCCCGGagccuacggcgUUCGAGCACau--CCGCgCGGc -3' miRNA: 3'- -CGGGCC-----------GAGCUCGUGgaacGGCG-GCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 11627 | 0.67 | 0.397575 |
Target: 5'- uGCCCccugcaccaucGGCUCGgcGGCGCCggcgucgcgcUGCaCGCUGGc -3' miRNA: 3'- -CGGG-----------CCGAGC--UCGUGGa---------ACG-GCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 50035 | 0.67 | 0.389044 |
Target: 5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3' miRNA: 3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 51858 | 0.67 | 0.394148 |
Target: 5'- aGCgCGGCgccgcgaacgacgCGAGCacgaccgaGCCgaGCCGCCGa -3' miRNA: 3'- -CGgGCCGa------------GCUCG--------UGGaaCGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 49849 | 0.66 | 0.429255 |
Target: 5'- gGCCCGGUgccggCGgcGGUACCggaagcagcucaGCCGgCCGGa -3' miRNA: 3'- -CGGGCCGa----GC--UCGUGGaa----------CGGC-GGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 33336 | 0.66 | 0.432866 |
Target: 5'- uGCgUcGCUgCGcGGCACCgUGCCGCCGa -3' miRNA: 3'- -CGgGcCGA-GC-UCGUGGaACGGCGGCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 41034 | 0.66 | 0.441056 |
Target: 5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3' miRNA: 3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 22212 | 0.68 | 0.309851 |
Target: 5'- gGCUCGcGCUCGAcaagcucacggccGCGCCgcccacGCCGgCCGGc -3' miRNA: 3'- -CGGGC-CGAGCU-------------CGUGGaa----CGGC-GGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 5177 | 0.68 | 0.317849 |
Target: 5'- cGgCCGGCgucgCGGGCGCgggcGCgGCCGGc -3' miRNA: 3'- -CgGGCCGa---GCUCGUGgaa-CGgCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 51248 | 0.68 | 0.317849 |
Target: 5'- cGCgCCGGCUaCGguaaggacggcaAGCugaACCUcaccgGCCGCCGGc -3' miRNA: 3'- -CG-GGCCGA-GC------------UCG---UGGAa----CGGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 40320 | 0.68 | 0.324508 |
Target: 5'- cCCCGGCgaccgcuUCGAGCAUCg-GCUcacgGCCGGc -3' miRNA: 3'- cGGGCCG-------AGCUCGUGGaaCGG----CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 15053 | 0.68 | 0.328252 |
Target: 5'- cGCCCGaGUUCGAGCaggcauggucgcuguACCc-GCCucggGCCGGa -3' miRNA: 3'- -CGGGC-CGAGCUCG---------------UGGaaCGG----CGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 43056 | 0.68 | 0.332787 |
Target: 5'- aCCCGGC-CG-GCACCgcgcGCCGCgGc -3' miRNA: 3'- cGGGCCGaGCuCGUGGaa--CGGCGgCc -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 36622 | 0.68 | 0.340447 |
Target: 5'- aUgCGGUUCGguugcuggauGGCGCCaUGuCCGCCGGc -3' miRNA: 3'- cGgGCCGAGC----------UCGUGGaAC-GGCGGCC- -5' |
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23956 | 5' | -61.9 | NC_005262.1 | + | 50777 | 0.68 | 0.348234 |
Target: 5'- gGUgCGGUUCGAGaucaaGCCgaagGUCGCCGa -3' miRNA: 3'- -CGgGCCGAGCUCg----UGGaa--CGGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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