miRNA display CGI


Results 121 - 140 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 33336 0.66 0.432866
Target:  5'- uGCgUcGCUgCGcGGCACCgUGCCGCCGa -3'
miRNA:   3'- -CGgGcCGA-GC-UCGUGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 41034 0.66 0.441056
Target:  5'- aGCCCGGagaGGGCGagauguuccccauCCUcGCUGCUGGc -3'
miRNA:   3'- -CGGGCCgagCUCGU-------------GGAaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49731 0.66 0.441971
Target:  5'- -aCCGGCggcCGAagccGCACCgacGCCGgCGGc -3'
miRNA:   3'- cgGGCCGa--GCU----CGUGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 59694 0.66 0.451183
Target:  5'- -aUCGGCgugccgccacgCGGGCGCUacGUCGCCGGc -3'
miRNA:   3'- cgGGCCGa----------GCUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51548 0.66 0.441971
Target:  5'- -aCCGGCUCGcGUACCacgugGUCGCgcgCGGa -3'
miRNA:   3'- cgGGCCGAGCuCGUGGaa---CGGCG---GCC- -5'
23956 5' -61.9 NC_005262.1 + 48342 0.67 0.397575
Target:  5'- aGCUCGGCaCGAccgacccggcGCugCUgGCgGCCGGc -3'
miRNA:   3'- -CGGGCCGaGCU----------CGugGAaCGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51858 0.67 0.394148
Target:  5'- aGCgCGGCgccgcgaacgacgCGAGCacgaccgaGCCgaGCCGCCGa -3'
miRNA:   3'- -CGgGCCGa------------GCUCG--------UGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 50035 0.67 0.389044
Target:  5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 36622 0.68 0.340447
Target:  5'- aUgCGGUUCGguugcuggauGGCGCCaUGuCCGCCGGc -3'
miRNA:   3'- cGgGCCGAGC----------UCGUGGaAC-GGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 50777 0.68 0.348234
Target:  5'- gGUgCGGUUCGAGaucaaGCCgaagGUCGCCGa -3'
miRNA:   3'- -CGgGCCGAGCUCg----UGGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 60501 0.68 0.348234
Target:  5'- cGCCgGGCcgCGcGGCGCag-GCCGCCa- -3'
miRNA:   3'- -CGGgCCGa-GC-UCGUGgaaCGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 20442 0.67 0.364185
Target:  5'- uGCaCGGUUCcGGCACCgucGCCGCgUGGg -3'
miRNA:   3'- -CGgGCCGAGcUCGUGGaa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 55792 0.67 0.372348
Target:  5'- -gCgGGCuUCGAGCAgaacGCCGCCGGc -3'
miRNA:   3'- cgGgCCG-AGCUCGUggaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 29643 0.67 0.372348
Target:  5'- gGCaUCGGCagCGAGCGgCaUGCCGCCc- -3'
miRNA:   3'- -CG-GGCCGa-GCUCGUgGaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 41687 0.67 0.380635
Target:  5'- nGCaCCGGCaUCG-GCAUCUaUGCCGCa-- -3'
miRNA:   3'- -CG-GGCCG-AGCuCGUGGA-ACGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 20579 0.67 0.389044
Target:  5'- aGCCCGGC--GAGCAgCgcgcgGCgCGCCGc -3'
miRNA:   3'- -CGGGCCGagCUCGUgGaa---CG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 32674 0.67 0.389044
Target:  5'- cGCuUCGaGUUCGcGCugCcgGCCGCCGGc -3'
miRNA:   3'- -CG-GGC-CGAGCuCGugGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 45224 0.67 0.389044
Target:  5'- cGCCgGGCUCG---GCCUgaaCGCCGGc -3'
miRNA:   3'- -CGGgCCGAGCucgUGGAacgGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18085 0.67 0.389044
Target:  5'- -aCUGGCUCGAaUGCCUcgaaGCgGCCGGc -3'
miRNA:   3'- cgGGCCGAGCUcGUGGAa---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 49763 0.66 0.451183
Target:  5'- cGCCCGcGCcCGAgGCuccgGCCgcUGCCgcGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCU-CG----UGGa-ACGG--CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.