miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 20288 0.66 0.432866
Target:  5'- uGCUaaCGGUUgCGAcCGCCUUGCCGuCCGc -3'
miRNA:   3'- -CGG--GCCGA-GCUcGUGGAACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 17536 0.66 0.431962
Target:  5'- uGCCCuGCaUGAGC-CCUUGCgcgaacgCGCCGa -3'
miRNA:   3'- -CGGGcCGaGCUCGuGGAACG-------GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 49849 0.66 0.429255
Target:  5'- gGCCCGGUgccggCGgcGGUACCggaagcagcucaGCCGgCCGGa -3'
miRNA:   3'- -CGGGCCGa----GC--UCGUGGaa----------CGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 31913 0.66 0.423872
Target:  5'- aCCC-GCUCGAcGCGCCggacGUCGCCa- -3'
miRNA:   3'- cGGGcCGAGCU-CGUGGaa--CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 12243 0.66 0.423872
Target:  5'- aGCaugCGGUcgcgucgauggUCGGGCACCUgucgaucGCgGCCGGc -3'
miRNA:   3'- -CGg--GCCG-----------AGCUCGUGGAa------CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 46139 0.66 0.422979
Target:  5'- aGCUCGGCgcgcuggCGGGCgaucucuGCC-UGCUGCuCGGc -3'
miRNA:   3'- -CGGGCCGa------GCUCG-------UGGaACGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 20713 0.66 0.422979
Target:  5'- uGCCCGGUcaggUCGAugaugaagcugccGCGgCgcgcggUGCCGgCCGGg -3'
miRNA:   3'- -CGGGCCG----AGCU-------------CGUgGa-----ACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 6729 0.66 0.420306
Target:  5'- gGCCCGuGCUUGucgaacaucucgcGCGCCUcguugUGCUcgugGCCGGg -3'
miRNA:   3'- -CGGGC-CGAGCu------------CGUGGA-----ACGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 16459 0.66 0.41499
Target:  5'- uUCUGGCgcugcgucUCGAGCGCCgaaucgGUCGCCa- -3'
miRNA:   3'- cGGGCCG--------AGCUCGUGGaa----CGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 51222 0.66 0.41147
Target:  5'- cGCCggCGGCagcagcagcucgaCGAGCGCCgccgcgaccUGCCGCCGc -3'
miRNA:   3'- -CGG--GCCGa------------GCUCGUGGa--------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 34466 0.67 0.406223
Target:  5'- uGCCCGGagccuacggcgUUCGAGCACau--CCGCgCGGc -3'
miRNA:   3'- -CGGGCC-----------GAGCUCGUGgaacGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 30878 0.67 0.406223
Target:  5'- gGCgCUGGCgagCGucGCGCgUgcgacGCCGCCGGc -3'
miRNA:   3'- -CG-GGCCGa--GCu-CGUGgAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 34339 0.67 0.405353
Target:  5'- cGCCuCGGCgaccuGCGCCUcUGCCGCagccuugCGGg -3'
miRNA:   3'- -CGG-GCCGagcu-CGUGGA-ACGGCG-------GCC- -5'
23956 5' -61.9 NC_005262.1 + 2698 0.67 0.403617
Target:  5'- cGCCCGGUacaucuucagguuaUCGGGCugcGCCUUcGUCGaCGGc -3'
miRNA:   3'- -CGGGCCG--------------AGCUCG---UGGAA-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 6605 0.67 0.40102
Target:  5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3'
miRNA:   3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 31888 0.67 0.40102
Target:  5'- cGUCCGGCgcgUCGAGCGggUUGCCcgcguagcccgugaaGUCGGg -3'
miRNA:   3'- -CGGGCCG---AGCUCGUggAACGG---------------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 11627 0.67 0.397575
Target:  5'- uGCCCccugcaccaucGGCUCGgcGGCGCCggcgucgcgcUGCaCGCUGGc -3'
miRNA:   3'- -CGGG-----------CCGAGC--UCGUGGa---------ACG-GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 48342 0.67 0.397575
Target:  5'- aGCUCGGCaCGAccgacccggcGCugCUgGCgGCCGGc -3'
miRNA:   3'- -CGGGCCGaGCU----------CGugGAaCGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6858 0.67 0.395003
Target:  5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3'
miRNA:   3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 51858 0.67 0.394148
Target:  5'- aGCgCGGCgccgcgaacgacgCGAGCacgaccgaGCCgaGCCGCCGa -3'
miRNA:   3'- -CGgGCCGa------------GCUCG--------UGGaaCGGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.