miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23957 3' -58.5 NC_005262.1 + 3530 0.66 0.627143
Target:  5'- gGUCGGACaUCcacgaugcGCCGGUCUUgcCGCCg -3'
miRNA:   3'- gCAGCCUGcAGa-------CGGUCGGGAa-GCGG- -5'
23957 3' -58.5 NC_005262.1 + 56763 0.66 0.620805
Target:  5'- gCGUCGGGCGacgagCgcuacaugaagcugGCCGGCCUgaagGCCg -3'
miRNA:   3'- -GCAGCCUGCa----Ga-------------CGGUCGGGaag-CGG- -5'
23957 3' -58.5 NC_005262.1 + 4911 0.66 0.602874
Target:  5'- aCGUCGGGCaguuugcucucgauGUCccgcacguguUGCgGGCCCUcaUCGaCCa -3'
miRNA:   3'- -GCAGCCUG--------------CAG----------ACGgUCGGGA--AGC-GG- -5'
23957 3' -58.5 NC_005262.1 + 19963 0.66 0.595507
Target:  5'- cCGcCGcGCG-CgGCCGGCCCgcggccgugUCGCCg -3'
miRNA:   3'- -GCaGCcUGCaGaCGGUCGGGa--------AGCGG- -5'
23957 3' -58.5 NC_005262.1 + 39009 0.66 0.595507
Target:  5'- -uUCGcGAUGUCgaagUGCUcGCCCggcUCGCCg -3'
miRNA:   3'- gcAGC-CUGCAG----ACGGuCGGGa--AGCGG- -5'
23957 3' -58.5 NC_005262.1 + 31828 0.66 0.595507
Target:  5'- uGUCGGuCG-CUGCgAGCgaugCCUugcucgUCGCCa -3'
miRNA:   3'- gCAGCCuGCaGACGgUCG----GGA------AGCGG- -5'
23957 3' -58.5 NC_005262.1 + 4889 0.66 0.585008
Target:  5'- gGUCGGGCc---GCCGGCCUgaUCGCg -3'
miRNA:   3'- gCAGCCUGcagaCGGUCGGGa-AGCGg -5'
23957 3' -58.5 NC_005262.1 + 4792 0.66 0.585008
Target:  5'- uGUCGGGa-UCggaGCCGGCCgcguagcgcuggUUUCGCCg -3'
miRNA:   3'- gCAGCCUgcAGa--CGGUCGG------------GAAGCGG- -5'
23957 3' -58.5 NC_005262.1 + 18816 0.67 0.574546
Target:  5'- gCG-CGGACuG-CUGCacguCGGCCCU-CGCCu -3'
miRNA:   3'- -GCaGCCUG-CaGACG----GUCGGGAaGCGG- -5'
23957 3' -58.5 NC_005262.1 + 41497 0.67 0.574546
Target:  5'- aCGUCGua-GUcCUGCCAGCUCgg-GCCa -3'
miRNA:   3'- -GCAGCcugCA-GACGGUCGGGaagCGG- -5'
23957 3' -58.5 NC_005262.1 + 41113 0.67 0.574546
Target:  5'- gGUCGaGgcGCGUCUGCgCAcugguccgcGCCCUgaaGCCa -3'
miRNA:   3'- gCAGC-C--UGCAGACG-GU---------CGGGAag-CGG- -5'
23957 3' -58.5 NC_005262.1 + 37397 0.67 0.574546
Target:  5'- gCGUCGcGCGUCUGCUggauGCCCcaauucaCGUCa -3'
miRNA:   3'- -GCAGCcUGCAGACGGu---CGGGaa-----GCGG- -5'
23957 3' -58.5 NC_005262.1 + 40370 0.67 0.564127
Target:  5'- uCGUCGGcgACGUCga-CGGCCUgUCuGCCg -3'
miRNA:   3'- -GCAGCC--UGCAGacgGUCGGGaAG-CGG- -5'
23957 3' -58.5 NC_005262.1 + 37820 0.67 0.543448
Target:  5'- uCGUCGGGCGUCgacggguauuccUGCCAcauacGuUCCUcgUUGCCg -3'
miRNA:   3'- -GCAGCCUGCAG------------ACGGU-----C-GGGA--AGCGG- -5'
23957 3' -58.5 NC_005262.1 + 46097 0.67 0.523024
Target:  5'- uCGuUCGGGCcagCgaccacgGCCGGCuUCUUCGCCg -3'
miRNA:   3'- -GC-AGCCUGca-Ga------CGGUCG-GGAAGCGG- -5'
23957 3' -58.5 NC_005262.1 + 33647 0.67 0.523024
Target:  5'- gCGUCGG-CaUCcGCCGGCgCUUCGgCg -3'
miRNA:   3'- -GCAGCCuGcAGaCGGUCGgGAAGCgG- -5'
23957 3' -58.5 NC_005262.1 + 42380 0.67 0.523024
Target:  5'- aCGUCGGcCGUC-GCgAGCUCggaccagUGCCg -3'
miRNA:   3'- -GCAGCCuGCAGaCGgUCGGGaa-----GCGG- -5'
23957 3' -58.5 NC_005262.1 + 3046 0.68 0.512922
Target:  5'- -uUCGaGcGCGUCUcCCAG-CCUUCGCCg -3'
miRNA:   3'- gcAGC-C-UGCAGAcGGUCgGGAAGCGG- -5'
23957 3' -58.5 NC_005262.1 + 39952 0.68 0.502902
Target:  5'- cCGgcaaGGGCGgcgUGCCGGCCUacgUUGCCg -3'
miRNA:   3'- -GCag--CCUGCag-ACGGUCGGGa--AGCGG- -5'
23957 3' -58.5 NC_005262.1 + 40306 0.68 0.502902
Target:  5'- -cUCGGGCGUCaGCgGGCgaaCC-UCGCCc -3'
miRNA:   3'- gcAGCCUGCAGaCGgUCG---GGaAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.