Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23957 | 5' | -57.6 | NC_005262.1 | + | 10762 | 0.66 | 0.608232 |
Target: 5'- -cGGUUGuGGUgauccgcccgcGCCGGGCGCG-CGGUa -3' miRNA: 3'- auCUAGCuCCA-----------CGGCUCGCGCaGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 31881 | 0.66 | 0.597417 |
Target: 5'- -uGGUCGAcGU-CCG-GCGCGUCGAg -3' miRNA: 3'- auCUAGCUcCAcGGCuCGCGCAGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 19121 | 0.66 | 0.57588 |
Target: 5'- cGGAUCG-GGcG-CGGGCGCGUCGc- -3' miRNA: 3'- aUCUAGCuCCaCgGCUCGCGCAGCua -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 15619 | 0.66 | 0.57588 |
Target: 5'- aGGAgcgcaUCGAGGcgcgGCUGAaCGCGUCGGg -3' miRNA: 3'- aUCU-----AGCUCCa---CGGCUcGCGCAGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 10638 | 0.67 | 0.554523 |
Target: 5'- aAGggCGGGuUGCCGAucGcCGCGUCGAa -3' miRNA: 3'- aUCuaGCUCcACGGCU--C-GCGCAGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 22391 | 0.67 | 0.554523 |
Target: 5'- ----aCGAGGUGCCG-GCGcCGaCGAUg -3' miRNA: 3'- aucuaGCUCCACGGCuCGC-GCaGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 45668 | 0.67 | 0.554523 |
Target: 5'- cAGAUCGAgcgcauGGUGCCGcacuucguGCGCaUCGAg -3' miRNA: 3'- aUCUAGCU------CCACGGCu-------CGCGcAGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 30542 | 0.67 | 0.533405 |
Target: 5'- cGGAUCGAcaGGaagcGCuCGAcguGCGCGUCGAUg -3' miRNA: 3'- aUCUAGCU--CCa---CG-GCU---CGCGCAGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 33914 | 0.67 | 0.532357 |
Target: 5'- -cGAUCGGuagcggcGGUGCCGAGCucGCGgCGGg -3' miRNA: 3'- auCUAGCU-------CCACGGCUCG--CGCaGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 45279 | 0.68 | 0.502295 |
Target: 5'- aUAGcuUCGAGGUGCUGcGCGC-UCGGc -3' miRNA: 3'- -AUCu-AGCUCCACGGCuCGCGcAGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 26884 | 0.68 | 0.4921 |
Target: 5'- -cGAUCGAGuGgGCCG-GCGCGUCc-- -3' miRNA: 3'- auCUAGCUC-CaCGGCuCGCGCAGcua -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 32548 | 0.68 | 0.4921 |
Target: 5'- -cGAUCGAuGGgGaCCGAcuuggGCGCGUCGAUc -3' miRNA: 3'- auCUAGCU-CCaC-GGCU-----CGCGCAGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 20743 | 0.68 | 0.472004 |
Target: 5'- cGGcgCGcGGUGCCGGcCGgGUCGAUg -3' miRNA: 3'- aUCuaGCuCCACGGCUcGCgCAGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 58643 | 0.69 | 0.433115 |
Target: 5'- --aGUCGAGcG-GCCGGGCGCG-CGAg -3' miRNA: 3'- aucUAGCUC-CaCGGCUCGCGCaGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 26332 | 0.69 | 0.423687 |
Target: 5'- cAGAugcUCGAGGagcugaUGCCGGGCGUG-CGGUu -3' miRNA: 3'- aUCU---AGCUCC------ACGGCUCGCGCaGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 28304 | 0.7 | 0.369805 |
Target: 5'- -uGAUCGGGGUuacGuuGAGCGCGUaGAg -3' miRNA: 3'- auCUAGCUCCA---CggCUCGCGCAgCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 21052 | 0.71 | 0.305586 |
Target: 5'- -cGAUCGucgugccguAGGcGCCGAGCGCGaCGAUg -3' miRNA: 3'- auCUAGC---------UCCaCGGCUCGCGCaGCUA- -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 43066 | 0.74 | 0.203481 |
Target: 5'- gGGGUCGAGcUGCCGAGCGaCG-CGAc -3' miRNA: 3'- aUCUAGCUCcACGGCUCGC-GCaGCUa -5' |
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23957 | 5' | -57.6 | NC_005262.1 | + | 9462 | 1.04 | 0.001343 |
Target: 5'- gUAGAUCGAGGUGCCGAGCGCGUCGAUg -3' miRNA: 3'- -AUCUAGCUCCACGGCUCGCGCAGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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