miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23957 5' -57.6 NC_005262.1 + 10762 0.66 0.608232
Target:  5'- -cGGUUGuGGUgauccgcccgcGCCGGGCGCG-CGGUa -3'
miRNA:   3'- auCUAGCuCCA-----------CGGCUCGCGCaGCUA- -5'
23957 5' -57.6 NC_005262.1 + 31881 0.66 0.597417
Target:  5'- -uGGUCGAcGU-CCG-GCGCGUCGAg -3'
miRNA:   3'- auCUAGCUcCAcGGCuCGCGCAGCUa -5'
23957 5' -57.6 NC_005262.1 + 19121 0.66 0.57588
Target:  5'- cGGAUCG-GGcG-CGGGCGCGUCGc- -3'
miRNA:   3'- aUCUAGCuCCaCgGCUCGCGCAGCua -5'
23957 5' -57.6 NC_005262.1 + 15619 0.66 0.57588
Target:  5'- aGGAgcgcaUCGAGGcgcgGCUGAaCGCGUCGGg -3'
miRNA:   3'- aUCU-----AGCUCCa---CGGCUcGCGCAGCUa -5'
23957 5' -57.6 NC_005262.1 + 10638 0.67 0.554523
Target:  5'- aAGggCGGGuUGCCGAucGcCGCGUCGAa -3'
miRNA:   3'- aUCuaGCUCcACGGCU--C-GCGCAGCUa -5'
23957 5' -57.6 NC_005262.1 + 22391 0.67 0.554523
Target:  5'- ----aCGAGGUGCCG-GCGcCGaCGAUg -3'
miRNA:   3'- aucuaGCUCCACGGCuCGC-GCaGCUA- -5'
23957 5' -57.6 NC_005262.1 + 45668 0.67 0.554523
Target:  5'- cAGAUCGAgcgcauGGUGCCGcacuucguGCGCaUCGAg -3'
miRNA:   3'- aUCUAGCU------CCACGGCu-------CGCGcAGCUa -5'
23957 5' -57.6 NC_005262.1 + 30542 0.67 0.533405
Target:  5'- cGGAUCGAcaGGaagcGCuCGAcguGCGCGUCGAUg -3'
miRNA:   3'- aUCUAGCU--CCa---CG-GCU---CGCGCAGCUA- -5'
23957 5' -57.6 NC_005262.1 + 33914 0.67 0.532357
Target:  5'- -cGAUCGGuagcggcGGUGCCGAGCucGCGgCGGg -3'
miRNA:   3'- auCUAGCU-------CCACGGCUCG--CGCaGCUa -5'
23957 5' -57.6 NC_005262.1 + 45279 0.68 0.502295
Target:  5'- aUAGcuUCGAGGUGCUGcGCGC-UCGGc -3'
miRNA:   3'- -AUCu-AGCUCCACGGCuCGCGcAGCUa -5'
23957 5' -57.6 NC_005262.1 + 26884 0.68 0.4921
Target:  5'- -cGAUCGAGuGgGCCG-GCGCGUCc-- -3'
miRNA:   3'- auCUAGCUC-CaCGGCuCGCGCAGcua -5'
23957 5' -57.6 NC_005262.1 + 32548 0.68 0.4921
Target:  5'- -cGAUCGAuGGgGaCCGAcuuggGCGCGUCGAUc -3'
miRNA:   3'- auCUAGCU-CCaC-GGCU-----CGCGCAGCUA- -5'
23957 5' -57.6 NC_005262.1 + 20743 0.68 0.472004
Target:  5'- cGGcgCGcGGUGCCGGcCGgGUCGAUg -3'
miRNA:   3'- aUCuaGCuCCACGGCUcGCgCAGCUA- -5'
23957 5' -57.6 NC_005262.1 + 58643 0.69 0.433115
Target:  5'- --aGUCGAGcG-GCCGGGCGCG-CGAg -3'
miRNA:   3'- aucUAGCUC-CaCGGCUCGCGCaGCUa -5'
23957 5' -57.6 NC_005262.1 + 26332 0.69 0.423687
Target:  5'- cAGAugcUCGAGGagcugaUGCCGGGCGUG-CGGUu -3'
miRNA:   3'- aUCU---AGCUCC------ACGGCUCGCGCaGCUA- -5'
23957 5' -57.6 NC_005262.1 + 28304 0.7 0.369805
Target:  5'- -uGAUCGGGGUuacGuuGAGCGCGUaGAg -3'
miRNA:   3'- auCUAGCUCCA---CggCUCGCGCAgCUa -5'
23957 5' -57.6 NC_005262.1 + 21052 0.71 0.305586
Target:  5'- -cGAUCGucgugccguAGGcGCCGAGCGCGaCGAUg -3'
miRNA:   3'- auCUAGC---------UCCaCGGCUCGCGCaGCUA- -5'
23957 5' -57.6 NC_005262.1 + 43066 0.74 0.203481
Target:  5'- gGGGUCGAGcUGCCGAGCGaCG-CGAc -3'
miRNA:   3'- aUCUAGCUCcACGGCUCGC-GCaGCUa -5'
23957 5' -57.6 NC_005262.1 + 9462 1.04 0.001343
Target:  5'- gUAGAUCGAGGUGCCGAGCGCGUCGAUg -3'
miRNA:   3'- -AUCUAGCUCCACGGCUCGCGCAGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.