miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23958 3' -57 NC_005262.1 + 51383 0.66 0.65673
Target:  5'- -aCGCCggCCaag--GCCGCGCCuGAc -3'
miRNA:   3'- caGCGGaaGGacuuaCGGCGCGGuCU- -5'
23958 3' -57 NC_005262.1 + 410 0.66 0.65673
Target:  5'- -aCGCCU--CUGu-UGCUGCGUCGGAa -3'
miRNA:   3'- caGCGGAagGACuuACGGCGCGGUCU- -5'
23958 3' -57 NC_005262.1 + 48687 0.66 0.645873
Target:  5'- -gCGCgUUCCagccGGAcGCCGCGCCgcAGAa -3'
miRNA:   3'- caGCGgAAGGa---CUUaCGGCGCGG--UCU- -5'
23958 3' -57 NC_005262.1 + 8132 0.66 0.645873
Target:  5'- aUCGUgUUCgUGAccGgCGUGCCGGAc -3'
miRNA:   3'- cAGCGgAAGgACUuaCgGCGCGGUCU- -5'
23958 3' -57 NC_005262.1 + 56912 0.66 0.645873
Target:  5'- cUCGCCggCgaGAucaagGCCGCGCUcgAGAa -3'
miRNA:   3'- cAGCGGaaGgaCUua---CGGCGCGG--UCU- -5'
23958 3' -57 NC_005262.1 + 34007 0.66 0.624132
Target:  5'- gGUUGCUg----GggUGCCGCGCCGu- -3'
miRNA:   3'- -CAGCGGaaggaCuuACGGCGCGGUcu -5'
23958 3' -57 NC_005262.1 + 55614 0.66 0.624132
Target:  5'- -gCGCCUUCCgGcGUGCUGaUGuCCAGGg -3'
miRNA:   3'- caGCGGAAGGaCuUACGGC-GC-GGUCU- -5'
23958 3' -57 NC_005262.1 + 48607 0.67 0.591594
Target:  5'- cGUCGCCUUgCaGAAcGCCGCGUa--- -3'
miRNA:   3'- -CAGCGGAAgGaCUUaCGGCGCGgucu -5'
23958 3' -57 NC_005262.1 + 38838 0.67 0.591594
Target:  5'- --gGCCUguUCCUGAAgcugGgCGCGCCGc- -3'
miRNA:   3'- cagCGGA--AGGACUUa---CgGCGCGGUcu -5'
23958 3' -57 NC_005262.1 + 9957 0.67 0.580803
Target:  5'- cUUGCCgUCCgc---GCCGCGCCGGu -3'
miRNA:   3'- cAGCGGaAGGacuuaCGGCGCGGUCu -5'
23958 3' -57 NC_005262.1 + 20366 0.67 0.579726
Target:  5'- cGUCGCCgUCgaucggauagacgUUGAGcGCCGCGCCGu- -3'
miRNA:   3'- -CAGCGGaAG-------------GACUUaCGGCGCGGUcu -5'
23958 3' -57 NC_005262.1 + 25385 0.67 0.570054
Target:  5'- -gCGCCggCCUGGAUGgUGuCGCCAu- -3'
miRNA:   3'- caGCGGaaGGACUUACgGC-GCGGUcu -5'
23958 3' -57 NC_005262.1 + 49999 0.67 0.548711
Target:  5'- -cCGCCga--UGAA-GCCGCGCCGGc -3'
miRNA:   3'- caGCGGaaggACUUaCGGCGCGGUCu -5'
23958 3' -57 NC_005262.1 + 11405 0.67 0.548711
Target:  5'- -aCGCCgaagCCgc---GCCGCGCCGGGc -3'
miRNA:   3'- caGCGGaa--GGacuuaCGGCGCGGUCU- -5'
23958 3' -57 NC_005262.1 + 2644 0.68 0.527624
Target:  5'- cUCGCCcgCCgccgcGAucUGCUGCGCCAGc -3'
miRNA:   3'- cAGCGGaaGGa----CUu-ACGGCGCGGUCu -5'
23958 3' -57 NC_005262.1 + 4954 0.68 0.506846
Target:  5'- cGUCGCCgaUCUGcGUGCCgaaGCGCCGc- -3'
miRNA:   3'- -CAGCGGaaGGACuUACGG---CGCGGUcu -5'
23958 3' -57 NC_005262.1 + 61740 0.68 0.496588
Target:  5'- uUCGCCgcgUCgUGGAUGCUGgGgUAGAg -3'
miRNA:   3'- cAGCGGa--AGgACUUACGGCgCgGUCU- -5'
23958 3' -57 NC_005262.1 + 35185 0.68 0.486425
Target:  5'- -aCGUCgUCCUGcAUGCCGCGCaugaagCGGAu -3'
miRNA:   3'- caGCGGaAGGACuUACGGCGCG------GUCU- -5'
23958 3' -57 NC_005262.1 + 60983 0.69 0.466402
Target:  5'- -aUGCgUUCCUGucgGCCGUGCCGa- -3'
miRNA:   3'- caGCGgAAGGACuuaCGGCGCGGUcu -5'
23958 3' -57 NC_005262.1 + 31077 0.69 0.466402
Target:  5'- cUCGCCgaCCUGAAgggcgaGCCGCgGCCcGAc -3'
miRNA:   3'- cAGCGGaaGGACUUa-----CGGCG-CGGuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.