miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23958 5' -52.1 NC_005262.1 + 41554 0.66 0.896467
Target:  5'- ----aUGCGCAGGccggccggcgUGGgcGGCGCGGCc -3'
miRNA:   3'- caaaaGCGCGUCCa---------ACU--UCGCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 56608 0.66 0.889144
Target:  5'- ----gCGCGUGGGcgacGAAGgGCAGCu -3'
miRNA:   3'- caaaaGCGCGUCCaa--CUUCgCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 52374 0.66 0.889144
Target:  5'- ---gUCGCGCAccuucGGcgGcccGGCGCGGCGc -3'
miRNA:   3'- caaaAGCGCGU-----CCaaCu--UCGCGUCGC- -5'
23958 5' -52.1 NC_005262.1 + 23290 0.66 0.881548
Target:  5'- ---gUCGCGCAGGUcGAuGGUGCcGUu -3'
miRNA:   3'- caaaAGCGCGUCCAaCU-UCGCGuCGc -5'
23958 5' -52.1 NC_005262.1 + 31898 0.66 0.881548
Target:  5'- ---gUCGaGCGGGUUGcccGCGUAGCc -3'
miRNA:   3'- caaaAGCgCGUCCAACuu-CGCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 46528 0.66 0.881548
Target:  5'- ----cCGCGCAGcagcccAGCGCGGCGc -3'
miRNA:   3'- caaaaGCGCGUCcaacu-UCGCGUCGC- -5'
23958 5' -52.1 NC_005262.1 + 29463 0.66 0.881548
Target:  5'- -----gGCGCAGGUcgccGAGGCGaaGGCGa -3'
miRNA:   3'- caaaagCGCGUCCAa---CUUCGCg-UCGC- -5'
23958 5' -52.1 NC_005262.1 + 2401 0.66 0.879996
Target:  5'- ---cUCGCGCgcgAGGUcGuaguagcggcuGCGCAGCGg -3'
miRNA:   3'- caaaAGCGCG---UCCAaCuu---------CGCGUCGC- -5'
23958 5' -52.1 NC_005262.1 + 23520 0.66 0.873683
Target:  5'- ----gCGCcaGCAGGagGAAGCGCGGg- -3'
miRNA:   3'- caaaaGCG--CGUCCaaCUUCGCGUCgc -5'
23958 5' -52.1 NC_005262.1 + 46522 0.66 0.873683
Target:  5'- --cUUCGUGUcguAGG-UGucGCGCAGCu -3'
miRNA:   3'- caaAAGCGCG---UCCaACuuCGCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 27260 0.66 0.872882
Target:  5'- -aUUUCGCGaaggcuuugGGGUUcGAcagcaacaucaugAGCGCGGCGa -3'
miRNA:   3'- caAAAGCGCg--------UCCAA-CU-------------UCGCGUCGC- -5'
23958 5' -52.1 NC_005262.1 + 31162 0.66 0.872882
Target:  5'- ----gCGCGUAGGUgaGAGCGUgaagaucGGCGa -3'
miRNA:   3'- caaaaGCGCGUCCAacUUCGCG-------UCGC- -5'
23958 5' -52.1 NC_005262.1 + 40820 0.66 0.865557
Target:  5'- --gUUCGCuuuGCagaGGGUgucgugGAAGUGCAGCa -3'
miRNA:   3'- caaAAGCG---CG---UCCAa-----CUUCGCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 7523 0.67 0.84855
Target:  5'- ---aUCGgGCAGGUUcggcGgcGCGuCGGCGc -3'
miRNA:   3'- caaaAGCgCGUCCAA----CuuCGC-GUCGC- -5'
23958 5' -52.1 NC_005262.1 + 58938 0.67 0.839686
Target:  5'- ----gCGCGCuucucGGUcGgcGCGCAGCa -3'
miRNA:   3'- caaaaGCGCGu----CCAaCuuCGCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 50305 0.67 0.838787
Target:  5'- ----cCGCGCGGaUUGAGGagccggcCGCAGCGc -3'
miRNA:   3'- caaaaGCGCGUCcAACUUC-------GCGUCGC- -5'
23958 5' -52.1 NC_005262.1 + 41288 0.67 0.830594
Target:  5'- ----cCGCGCGuGGgcGAcaucaagguauGGCGCGGCGc -3'
miRNA:   3'- caaaaGCGCGU-CCaaCU-----------UCGCGUCGC- -5'
23958 5' -52.1 NC_005262.1 + 38563 0.67 0.830594
Target:  5'- cGUUgcgCGCGguuCGGGcgGAAGgGCAGCa -3'
miRNA:   3'- -CAAaa-GCGC---GUCCaaCUUCgCGUCGc -5'
23958 5' -52.1 NC_005262.1 + 4720 0.67 0.830594
Target:  5'- -----aGUGCGGGUUGGugagcaGGCGguGCu -3'
miRNA:   3'- caaaagCGCGUCCAACU------UCGCguCGc -5'
23958 5' -52.1 NC_005262.1 + 15736 0.67 0.827823
Target:  5'- ---gUCGCgGCAGGUgcgaccgacgcgcuUGcGGGCGCGGCc -3'
miRNA:   3'- caaaAGCG-CGUCCA--------------AC-UUCGCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.