miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23959	3'	-55.5	NC_005262.1	+	11197	0.67	0.717733
	Target:  5'- cAGCUCGCCCGgcuuuacgCGguagUCGUcGCCGa -3' miRNA:   3'- cUCGAGCGGGUa-------GCaca-AGCAcUGGC- -5'
23959	3'	-55.5	NC_005262.1	+	8624	0.67	0.706111
	Target:  5'- -uGCUCGUCCG-CGaccaugaUGUUCGcGGCCGg -3' miRNA:   3'- cuCGAGCGGGUaGC-------ACAAGCaCUGGC- -5'
23959	3'	-55.5	NC_005262.1	+	570	0.67	0.697605
	Target:  5'- -cGCUCGCCCAaccgcuucagcucaUCGUgauaacgcgcaugcaGUUCGUGAUa- -3' miRNA:   3'- cuCGAGCGGGU--------------AGCA---------------CAAGCACUGgc -5'
23959	3'	-55.5	NC_005262.1	+	40219	0.67	0.685846
	Target:  5'- -cGCUCGaCUgguacuguugaaGUCGUGcgCGUGACCGc -3' miRNA:   3'- cuCGAGCgGG------------UAGCACaaGCACUGGC- -5'
23959	3'	-55.5	NC_005262.1	+	36262	0.68	0.610166
	Target:  5'- uGAGCUCGCCCucGUCGgUGcgCGcgGGCaCGa -3' miRNA:   3'- -CUCGAGCGGG--UAGC-ACaaGCa-CUG-GC- -5'
23959	3'	-55.5	NC_005262.1	+	15377	0.7	0.524873
	Target:  5'- -cGC-CGUCCGUCGUGUUCGggauuucGCCGc -3' miRNA:   3'- cuCGaGCGGGUAGCACAAGCac-----UGGC- -5'
23959	3'	-55.5	NC_005262.1	+	35414	0.7	0.514494
	Target:  5'- -cGCUCcaGCCCGgcgaCGUGUUCGUGuuCGa -3' miRNA:   3'- cuCGAG--CGGGUa---GCACAAGCACugGC- -5'
23959	3'	-55.5	NC_005262.1	+	17004	0.71	0.473873
	Target:  5'- cGAGCgcgCGCUCGUCGUGcugaaGUcGACCGa -3' miRNA:   3'- -CUCGa--GCGGGUAGCACaag--CA-CUGGC- -5'
23959	3'	-55.5	NC_005262.1	+	6751	0.75	0.271373
	Target:  5'- -cGCgCGCCuCGUUGUGcUCGUGGCCGg -3' miRNA:   3'- cuCGaGCGG-GUAGCACaAGCACUGGC- -5'
23959	3'	-55.5	NC_005262.1	+	8121	1.1	0.001104
	Target:  5'- aGAGCUCGCCCAUCGUGUUCGUGACCGg -3' miRNA:   3'- -CUCGAGCGGGUAGCACAAGCACUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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