Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 570 | 0.67 | 0.697605 |
Target: 5'- -cGCUCGCCCAaccgcuucagcucaUCGUgauaacgcgcaugcaGUUCGUGAUa- -3' miRNA: 3'- cuCGAGCGGGU--------------AGCA---------------CAAGCACUGgc -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 6751 | 0.75 | 0.271373 |
Target: 5'- -cGCgCGCCuCGUUGUGcUCGUGGCCGg -3' miRNA: 3'- cuCGaGCGG-GUAGCACaAGCACUGGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 8121 | 1.1 | 0.001104 |
Target: 5'- aGAGCUCGCCCAUCGUGUUCGUGACCGg -3' miRNA: 3'- -CUCGAGCGGGUAGCACAAGCACUGGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 8624 | 0.67 | 0.706111 |
Target: 5'- -uGCUCGUCCG-CGaccaugaUGUUCGcGGCCGg -3' miRNA: 3'- cuCGAGCGGGUaGC-------ACAAGCaCUGGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 11197 | 0.67 | 0.717733 |
Target: 5'- cAGCUCGCCCGgcuuuacgCGguagUCGUcGCCGa -3' miRNA: 3'- cUCGAGCGGGUa-------GCaca-AGCAcUGGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 15377 | 0.7 | 0.524873 |
Target: 5'- -cGC-CGUCCGUCGUGUUCGggauuucGCCGc -3' miRNA: 3'- cuCGaGCGGGUAGCACAAGCac-----UGGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 17004 | 0.71 | 0.473873 |
Target: 5'- cGAGCgcgCGCUCGUCGUGcugaaGUcGACCGa -3' miRNA: 3'- -CUCGa--GCGGGUAGCACaag--CA-CUGGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 35414 | 0.7 | 0.514494 |
Target: 5'- -cGCUCcaGCCCGgcgaCGUGUUCGUGuuCGa -3' miRNA: 3'- cuCGAG--CGGGUa---GCACAAGCACugGC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 36262 | 0.68 | 0.610166 |
Target: 5'- uGAGCUCGCCCucGUCGgUGcgCGcgGGCaCGa -3' miRNA: 3'- -CUCGAGCGGG--UAGC-ACaaGCa-CUG-GC- -5' |
|||||||
23959 | 3' | -55.5 | NC_005262.1 | + | 40219 | 0.67 | 0.685846 |
Target: 5'- -cGCUCGaCUgguacuguugaaGUCGUGcgCGUGACCGc -3' miRNA: 3'- cuCGAGCgGG------------UAGCACaaGCACUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home