miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23959 5' -67.3 NC_005262.1 + 53817 0.66 0.247744
Target:  5'- aGCGGCacgggcauCGAGCugacgcaccgGCGCGGCgcggaCGGCa -3'
miRNA:   3'- gCGCCGgu------GCUCG----------CGCGCCGg----GCCGa -5'
23959 5' -67.3 NC_005262.1 + 49625 0.66 0.247744
Target:  5'- aGCGGCUugcCGcacuccucGGCGCgGCGGacaauCCCGGCg -3'
miRNA:   3'- gCGCCGGu--GC--------UCGCG-CGCC-----GGGCCGa -5'
23959 5' -67.3 NC_005262.1 + 35356 0.66 0.247744
Target:  5'- gGCGacaCgGCGAGCacgGCGCGGCCCGa-- -3'
miRNA:   3'- gCGCc--GgUGCUCG---CGCGCCGGGCcga -5'
23959 5' -67.3 NC_005262.1 + 59656 0.66 0.247744
Target:  5'- gGC-GCCACGcGGCGC-CGuuuuuuuauGCCCGGCUu -3'
miRNA:   3'- gCGcCGGUGC-UCGCGcGC---------CGGGCCGA- -5'
23959 5' -67.3 NC_005262.1 + 30284 0.66 0.247744
Target:  5'- aGCGGgCAauCGAGCGCGCugucgacaaGGCCCagaccGCg -3'
miRNA:   3'- gCGCCgGU--GCUCGCGCG---------CCGGGc----CGa -5'
23959 5' -67.3 NC_005262.1 + 40240 0.66 0.247158
Target:  5'- cCGCGcGCgGCGGGCgguuggucagucuGCGCGGuccuCCCGcGCUu -3'
miRNA:   3'- -GCGC-CGgUGCUCG-------------CGCGCC----GGGC-CGA- -5'
23959 5' -67.3 NC_005262.1 + 23354 0.66 0.241938
Target:  5'- -aCGGCCgGCGugaAGCGCGCGGC--GGCg -3'
miRNA:   3'- gcGCCGG-UGC---UCGCGCGCCGggCCGa -5'
23959 5' -67.3 NC_005262.1 + 38976 0.66 0.240219
Target:  5'- gCGcCGGCCGCGAucgcgagcucGCGCuugcccuucGCGaugucgaagugcucGCCCGGCUc -3'
miRNA:   3'- -GC-GCCGGUGCU----------CGCG---------CGC--------------CGGGCCGA- -5'
23959 5' -67.3 NC_005262.1 + 48665 0.66 0.236247
Target:  5'- aCGcCGGCCGCGAuGCGUGCauuccacGCCUucagGGCg -3'
miRNA:   3'- -GC-GCCGGUGCU-CGCGCGc------CGGG----CCGa -5'
23959 5' -67.3 NC_005262.1 + 45025 0.66 0.236247
Target:  5'- aCGCGGCagaugGCGAGCaUGgGGaucaaCCCGGCg -3'
miRNA:   3'- -GCGCCGg----UGCUCGcGCgCC-----GGGCCGa -5'
23959 5' -67.3 NC_005262.1 + 36463 0.66 0.236247
Target:  5'- -cUGGCgCAUGGGCGCGCGcgaGgCUGGCg -3'
miRNA:   3'- gcGCCG-GUGCUCGCGCGC---CgGGCCGa -5'
23959 5' -67.3 NC_005262.1 + 25728 0.66 0.236247
Target:  5'- uGCaGGCCgagGCGAuCGCGCaGgCCGGCa -3'
miRNA:   3'- gCG-CCGG---UGCUcGCGCGcCgGGCCGa -5'
23959 5' -67.3 NC_005262.1 + 55637 0.66 0.236247
Target:  5'- aGCcgGGCCGCGcGCuCGUGGCcgcguCCGGCa -3'
miRNA:   3'- gCG--CCGGUGCuCGcGCGCCG-----GGCCGa -5'
23959 5' -67.3 NC_005262.1 + 19125 0.66 0.236247
Target:  5'- -uCGGgCGCGGGCGCGUcGC-CGGCg -3'
miRNA:   3'- gcGCCgGUGCUCGCGCGcCGgGCCGa -5'
23959 5' -67.3 NC_005262.1 + 11482 0.66 0.235684
Target:  5'- gCGCGaGCaCAUGGGC-CGCGucgccgaGCUCGGCUg -3'
miRNA:   3'- -GCGC-CG-GUGCUCGcGCGC-------CGGGCCGA- -5'
23959 5' -67.3 NC_005262.1 + 34497 0.66 0.232886
Target:  5'- gCGCGGCgGCGcGCGacuucugcgagacgaCGCGGCUgUGGCg -3'
miRNA:   3'- -GCGCCGgUGCuCGC---------------GCGCCGG-GCCGa -5'
23959 5' -67.3 NC_005262.1 + 11080 0.66 0.230668
Target:  5'- aGCGGCCAaa---GgGCGGCCCgcuGGCa -3'
miRNA:   3'- gCGCCGGUgcucgCgCGCCGGG---CCGa -5'
23959 5' -67.3 NC_005262.1 + 6750 0.66 0.230668
Target:  5'- uCGCGcGCCuCGuuguGCuCGUGGCCgGGCa -3'
miRNA:   3'- -GCGC-CGGuGCu---CGcGCGCCGGgCCGa -5'
23959 5' -67.3 NC_005262.1 + 28164 0.66 0.230668
Target:  5'- gCGCGGCgCAacuGCGCGCGGC--GGCc -3'
miRNA:   3'- -GCGCCG-GUgcuCGCGCGCCGggCCGa -5'
23959 5' -67.3 NC_005262.1 + 58895 0.66 0.230668
Target:  5'- uGCuGCCGCGcuGCGCGaucaGGCCggCGGCc -3'
miRNA:   3'- gCGcCGGUGCu-CGCGCg---CCGG--GCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.