miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23960 3' -55.3 NC_005262.1 + 5073 0.66 0.765539
Target:  5'- cGCGgcgGCgGCGCGuGCgaccGGCUCGg -3'
miRNA:   3'- cUGCa--UGaCGCGCuCGacaaCCGAGC- -5'
23960 3' -55.3 NC_005262.1 + 37826 0.66 0.745037
Target:  5'- -gUGUACUGCGCGAGCggcaacaaGGUguucaUCGg -3'
miRNA:   3'- cuGCAUGACGCGCUCGacaa----CCG-----AGC- -5'
23960 3' -55.3 NC_005262.1 + 52326 0.67 0.670305
Target:  5'- cAUGUGCUcgcGCGCGAGCgcgGUaGGCaCGa -3'
miRNA:   3'- cUGCAUGA---CGCGCUCGa--CAaCCGaGC- -5'
23960 3' -55.3 NC_005262.1 + 17279 0.67 0.670305
Target:  5'- gGGC-UGCUGCGCGGGCagg-GGCgUCGc -3'
miRNA:   3'- -CUGcAUGACGCGCUCGacaaCCG-AGC- -5'
23960 3' -55.3 NC_005262.1 + 47969 0.67 0.6594
Target:  5'- cACGUACUGCuggaucGCGAGCgcgaGaUGGCUUu -3'
miRNA:   3'- cUGCAUGACG------CGCUCGa---CaACCGAGc -5'
23960 3' -55.3 NC_005262.1 + 6530 0.67 0.64847
Target:  5'- -cCGUgaGCUGCGCGAGCUGgUUG--UCGa -3'
miRNA:   3'- cuGCA--UGACGCGCUCGAC-AACcgAGC- -5'
23960 3' -55.3 NC_005262.1 + 52853 0.69 0.572082
Target:  5'- uGCcUGCUGCGCGuAGCgc--GGCUCGa -3'
miRNA:   3'- cUGcAUGACGCGC-UCGacaaCCGAGC- -5'
23960 3' -55.3 NC_005262.1 + 32865 0.69 0.550566
Target:  5'- cACGUGCgGCGcCGAGCUGUUcGCcgCGu -3'
miRNA:   3'- cUGCAUGaCGC-GCUCGACAAcCGa-GC- -5'
23960 3' -55.3 NC_005262.1 + 3311 0.7 0.487758
Target:  5'- -uUGUAgagGUGCGAGCUGUUGGuCUUGc -3'
miRNA:   3'- cuGCAUga-CGCGCUCGACAACC-GAGC- -5'
23960 3' -55.3 NC_005262.1 + 1914 0.71 0.447813
Target:  5'- gGGCGgaggGUGCGGGUUGcgUGGCUCGc -3'
miRNA:   3'- -CUGCaugaCGCGCUCGACa-ACCGAGC- -5'
23960 3' -55.3 NC_005262.1 + 34131 0.72 0.409749
Target:  5'- gGGCGgGCUGCGCGGGCgcgGgcGGCa-- -3'
miRNA:   3'- -CUGCaUGACGCGCUCGa--CaaCCGagc -5'
23960 3' -55.3 NC_005262.1 + 4413 0.72 0.373765
Target:  5'- cGCGccUGCUGCGCGAGCgccugGaGCUCGg -3'
miRNA:   3'- cUGC--AUGACGCGCUCGacaa-C-CGAGC- -5'
23960 3' -55.3 NC_005262.1 + 8677 0.78 0.169732
Target:  5'- uGCGaACUGCGCGAGCaUG-UGGUUCGg -3'
miRNA:   3'- cUGCaUGACGCGCUCG-ACaACCGAGC- -5'
23960 3' -55.3 NC_005262.1 + 7891 1.09 0.001215
Target:  5'- cGACGUACUGCGCGAGCUGUUGGCUCGu -3'
miRNA:   3'- -CUGCAUGACGCGCUCGACAACCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.