miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23960 5' -57.7 NC_005262.1 + 7519 0.66 0.620997
Target:  5'- aUCCAUcGGGCagguucGGCgGCGCGuCGGCGCGc -3'
miRNA:   3'- -AGGUA-CUUGc-----UCG-CGUGC-GCCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 49826 0.66 0.619913
Target:  5'- gCCGcgcGAugGAGCGCGCGaauggccCGGUGCc- -3'
miRNA:   3'- aGGUa--CUugCUCGCGUGC-------GCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 51152 0.66 0.610166
Target:  5'- gCCGUGAAgaagucgcCGAGCGCGCaGCaGGCaGCc- -3'
miRNA:   3'- aGGUACUU--------GCUCGCGUG-CG-CCG-CGua -5'
23960 5' -57.7 NC_005262.1 + 7100 0.66 0.610166
Target:  5'- cUCCA---GCGAGCGCACGCuGuCGUc- -3'
miRNA:   3'- -AGGUacuUGCUCGCGUGCGcC-GCGua -5'
23960 5' -57.7 NC_005262.1 + 46882 0.66 0.610166
Target:  5'- cUUCAUGugguGCGgugcGGUGCGgGCGGUGCGg -3'
miRNA:   3'- -AGGUACu---UGC----UCGCGUgCGCCGCGUa -5'
23960 5' -57.7 NC_005262.1 + 46721 0.66 0.610166
Target:  5'- -gCGUcGACGGGCGCGCcuauCGGCGCc- -3'
miRNA:   3'- agGUAcUUGCUCGCGUGc---GCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 50386 0.66 0.610166
Target:  5'- aCCGUGG-CGAcGCGaacCGCGCGGCGa-- -3'
miRNA:   3'- aGGUACUuGCU-CGC---GUGCGCCGCgua -5'
23960 5' -57.7 NC_005262.1 + 44144 0.66 0.60692
Target:  5'- uUCCGgccGGACGcGCGCgcgaucgggcaggaGCGCGGCgGCGa -3'
miRNA:   3'- -AGGUa--CUUGCuCGCG--------------UGCGCCG-CGUa -5'
23960 5' -57.7 NC_005262.1 + 51405 0.66 0.60692
Target:  5'- aCCGUGugcaccgcgugcucGGCG-GCGCGCGCGaGgGCGa -3'
miRNA:   3'- aGGUAC--------------UUGCuCGCGUGCGC-CgCGUa -5'
23960 5' -57.7 NC_005262.1 + 15010 0.66 0.599354
Target:  5'- cUCGUGAGCucGCGCACGUccuGCGCu- -3'
miRNA:   3'- aGGUACUUGcuCGCGUGCGc--CGCGua -5'
23960 5' -57.7 NC_005262.1 + 4652 0.66 0.599354
Target:  5'- cUCCAUGcGCGcGGCG-ACGCGGCcCGg -3'
miRNA:   3'- -AGGUACuUGC-UCGCgUGCGCCGcGUa -5'
23960 5' -57.7 NC_005262.1 + 41584 0.66 0.599354
Target:  5'- gCCGUGAGCuugucGAGCGCgaGCcCGGCGUu- -3'
miRNA:   3'- aGGUACUUG-----CUCGCG--UGcGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 24881 0.66 0.599354
Target:  5'- gCCAUcGAucugcGCGAGCGCAagaaauacUGCGGCGg-- -3'
miRNA:   3'- aGGUA-CU-----UGCUCGCGU--------GCGCCGCgua -5'
23960 5' -57.7 NC_005262.1 + 1871 0.66 0.598274
Target:  5'- aCCGUugguuucGAGCcGGCGCAgcccUGCGGCGUAUc -3'
miRNA:   3'- aGGUA-------CUUGcUCGCGU----GCGCCGCGUA- -5'
23960 5' -57.7 NC_005262.1 + 15169 0.66 0.588569
Target:  5'- aUguUGGACGgcacgcAGCGCuACGCGGCGUu- -3'
miRNA:   3'- aGguACUUGC------UCGCG-UGCGCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 61781 0.66 0.588569
Target:  5'- gCCGaccGACcAGCGCguuuucgccuGCGCGGCGCAUg -3'
miRNA:   3'- aGGUac-UUGcUCGCG----------UGCGCCGCGUA- -5'
23960 5' -57.7 NC_005262.1 + 54044 0.66 0.588569
Target:  5'- aCCAU---CGAGCGCACG-GGCGaCGa -3'
miRNA:   3'- aGGUAcuuGCUCGCGUGCgCCGC-GUa -5'
23960 5' -57.7 NC_005262.1 + 45815 0.66 0.588569
Target:  5'- gUCgAaGAACGuGCGCACuucCGGCGCu- -3'
miRNA:   3'- -AGgUaCUUGCuCGCGUGc--GCCGCGua -5'
23960 5' -57.7 NC_005262.1 + 35220 0.66 0.588569
Target:  5'- gCCGUaGGGCaugccgucGCGCGCGCGGCGgAa -3'
miRNA:   3'- aGGUA-CUUGcu------CGCGUGCGCCGCgUa -5'
23960 5' -57.7 NC_005262.1 + 48060 0.66 0.586416
Target:  5'- gUCCAgaaguucucagcGAAUGAGCGCgccACGuCGaGCGCAUa -3'
miRNA:   3'- -AGGUa-----------CUUGCUCGCG---UGC-GC-CGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.